Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0111 ATGTCTCAAAGAATGGGGACAAAACTTTTCATCAGCAGATTATCGTTTTTTACCACAACGGAACAGCTTAAGGTTTTGTTTTCCCCATTTGGAGTAATCACAGAAGCTAATCTAGTTTTGGACTCAAGAACTCGAAGGCCAAAAGGGTTTGGTTTTGTCTCCTATGAATCTGAAATTCAAGCGGAGAAAGCTGTCAAAGCCATGAATGGCAGGATAGTTGATGGAAGGCTGATATTCGTTGAACCAGCAAAAGTTGAATGA 261 0.3985 MSQRMGTKLFISRLSFFTTTEQLKVLFSPFGVITEANLVLDSRTRRPKGFGFVSYESEIQAEKAVKAMNGRIVDGRLIFVEPAKVE 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0111 86 Gene3D - 2 86 IPR012677 -
Lal8g0111 86 PANTHER BNAA02G06700D PROTEIN 4 84 - -
Lal8g0111 86 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Lal8g0111 86 SUPERFAMILY RNA-binding domain, RBD 6 84 IPR035979 GO:0003676
Lal8g0111 86 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Lal8g0111 86 PANTHER TRANSFORMER-2-RELATED 4 84 - -
Lal8g0111 86 SMART rrm1_1 8 81 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0111 Lal-Chr8 779318 783809 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0111 7 84 Eukaryotic Initiation Factors Gene Family AT1G49760 35.897 2.88e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0111 K13195 - gmx:100781760 130.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0111 8 779318 783809 Lal8g0111 8 779318 783809 ECH