Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0110 ATGTCTGCAGCTCTGGATATGACGCTTGATGATATCATCAAGAATAACAAGAAATCTGGATCCGCTAATTCTCGGGGCCGTTCTCGTGGATCTGGATCGGGTCCAGGGCCAACTCGCCGCTTCAACAACCGTGCCGCCAACCGCTCTGCACCTTATTCTACCGCTAAGGCACCGGAGACGGCATGGCAACATGACTTATATGCAGATCCGGCTGTCAATTTGGCGGCGGCGTTCCCAGGACATGGTGGTCGAGCGTCTTCAATTGAAACAGGAACCAAGATCTACATATCTAATTTGGATTATGGTGTTTCCAATGATGATATCAAGGAATTGTTTTCTGAAGTTGGCGACGTTAAAAGGCATACTGTACATTACGACAGGAGTGGGAGATCAAAGGGTACAGCAGAAGTTGTCTTCTCACGACGAGGTGATGCTGTAGCTGCGGTGAAGAGGTACAACAATGTTCAATTAGATGGAAAACCCATGAAGGTGGAGATTGTGGGAACAAATATTACTACACATGCTGTGGCGGCACCTGCTGCAAATGTAGCTTTTGGAAATTTAAGTGGAATTCCAAGAAGTGGACAAGGGAGAAGTGGGGCATTGGGAAGGCCACGTGGTGGAGGAAGTAGAGGACGTGGTGGAGCTCGAAGGGGTCGAGGACGTGGAAGTGGAAGTGGAAGAGGCCGTGGTGAAAAGGTATCTGCAGATGACCTTGATGCTGACTTGGCCAAGTATCATGAAGAGGCAATGCAATTGAACTAG 765 0.4876 MSAALDMTLDDIIKNNKKSGSANSRGRSRGSGSGPGPTRRFNNRAANRSAPYSTAKAPETAWQHDLYADPAVNLAAAFPGHGGRASSIETGTKIYISNLDYGVSNDDIKELFSEVGDVKRHTVHYDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKVEIVGTNITTHAVAAPAANVAFGNLSGIPRSGQGRSGALGRPRGGGSRGRGGARRGRGRGSGSGRGRGEKVSADDLDADLAKYHEEAMQLN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0110 254 MobiDBLite consensus disorder prediction 14 56 - -
Lal8g0110 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 162 IPR000504 GO:0003723
Lal8g0110 254 SMART rrm1_1 93 165 IPR000504 GO:0003723
Lal8g0110 254 Gene3D - 82 236 IPR012677 -
Lal8g0110 254 SUPERFAMILY RNA-binding domain, RBD 30 166 IPR035979 GO:0003676
Lal8g0110 254 SMART FoP_duplication_2 181 254 IPR025715 -
Lal8g0110 254 MobiDBLite consensus disorder prediction 14 57 - -
Lal8g0110 254 MobiDBLite consensus disorder prediction 225 247 - -
Lal8g0110 254 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 253 - -
Lal8g0110 254 MobiDBLite consensus disorder prediction 190 254 - -
Lal8g0110 254 CDD RRM_THOC4 92 166 - -
Lal8g0110 254 Pfam C-terminal duplication domain of Friend of PRMT1 196 248 IPR025715 -
Lal8g0110 254 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 253 - -
Lal8g0110 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0110 Lal-Chr8 775728 780745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0110 91 166 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 8.13e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0110 K12881 - gmx:100783362 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0110 8 775728 780745 Lal8g0110 8 775728 780745 ECH
Lal25g0151 25 946989 955926 Lal8g0110 8 775728 780745 LSH