Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0103 ATGGGAATTTGTTTTAGCAACCAAATTAAAGCTGAAAGCCCCTATAACACTGTGATACAACAGAACCAGTATGTGAGTACAAATGGAAGTGATATGAGCAAAGATAAGGGCTCAGTAGTGTTGGTACCTCGGAGTGAGGGTGAGATATTGCAGTCATCAAAGTTAAAGAGCTTTACTTTGGTACAACTTAAGATGGCTACTAAGAATTTCCGTCCAGACAGTGTATTAGGAGAAGGTGGTTTTGGATCAGTTTTCAAGGGTTGGATTGATGAGAATTCATTGGCTCCTTCCAAACCCGGCACTGGTATTGTTATTGCTGTCAAAAGACTTAATCAAGATAGCATACAAGGTCACAGGGAGTGGTTGGCCGAAGTAAACTTTCTAGGACAGTTTTCTCATCCTCATCTTGTGAGATTGATTGGATATTGCCTTGAAGATGAACACCGTCTTCTTGTCTATGAATTTATGCCTCGTGGAAGCTTGGAGAATCATTTGTTTAGGAGAGGCTCATATTTTCAACCACTTTCTTGGAGCCTCCGATTGAAGGTTGCTCTTGATGCTGCCAAAGGACTTGCATTTCTGCACAATGCTGAAAACAAAGTGATATATCGAGATTTCAAAACTTCAAATATCTTGTTGGATTCGAATTATGAAGCAAAACTTTCGGATTTTGGGCTAGCGAAGGATGGACCAACAGGCGACAAAAGTCATGTCTCAACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATGTAGCCACCGGTCATCTTACGACAAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTACTGGAAATGATATCCGGCAAGCGAGCAGTTGACAAGAACCGACCAACTGGAGAACACAATTTGGTGGAATGGGCTAAACAATACTTGGCTAACAAACGTAAGATTTTTCGAGTGTTGGACAGCCGTCTCGAAGGGCAATACTCAACAGATGAGGCCTATAAAGTAGCAACGCTTGCTTCCCGATGCCTATCAACAGAAATCAAGTACAGACCCAACATGGACCAAGTTGTCGCAATTTTGGAGCAGCTGCAGGTTCGTAATGTAAATGGAAGGAATCAAAGTCCTTCTGTTAATCTGTCATGGGCTCGTCAAAATAATGCTGATGATGCTAGCCGTGGAAGTGTCCCCACGGTGTATCCCCGACCCTCTGCTTCCCCTCTCTATGCTTGA 1206 0.4303 MGICFSNQIKAESPYNTVIQQNQYVSTNGSDMSKDKGSVVLVPRSEGEILQSSKLKSFTLVQLKMATKNFRPDSVLGEGGFGSVFKGWIDENSLAPSKPGTGIVIAVKRLNQDSIQGHREWLAEVNFLGQFSHPHLVRLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAAKGLAFLHNAENKVIYRDFKTSNILLDSNYEAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYVATGHLTTKSDVYSFGVVLLEMISGKRAVDKNRPTGEHNLVEWAKQYLANKRKIFRVLDSRLEGQYSTDEAYKVATLASRCLSTEIKYRPNMDQVVAILEQLQVRNVNGRNQSPSVNLSWARQNNADDASRGSVPTVYPRPSASPLYA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0103 401 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Lal8g0103 401 CDD STKc_IRAK 76 355 - -
Lal8g0103 401 Gene3D Phosphorylase Kinase; domain 1 45 155 - -
Lal8g0103 401 SUPERFAMILY Protein kinase-like (PK-like) 45 352 IPR011009 -
Lal8g0103 401 Pfam Protein tyrosine and serine/threonine kinase 74 351 IPR001245 GO:0004672|GO:0006468
Lal8g0103 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Lal8g0103 401 ProSiteProfiles Protein kinase domain profile. 70 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal8g0103 401 Gene3D Transferase(Phosphotransferase) domain 1 156 376 - -
Lal8g0103 401 PANTHER OS01G0588500 PROTEIN-RELATED 27 377 - -
Lal8g0103 401 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 27 377 - -
Lal8g0103 401 MobiDBLite consensus disorder prediction 377 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0103 Lal-Chr8 737095 739824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0103 48 352 Glycoside Hydrolase AT3G07070 49.346 1.09e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal8g0103 PK_Tyr_Ser-Thr 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0103 - - gmx:100788856 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0103 8 737095 739824 Lal8g0103 8 737095 739824 ECH
Lal25g0143 25 893657 896931 Lal8g0103 8 737095 739824 LSH
Lal8g0103 8 737095 739824 Lal2g0225 2 1316141 1322979 PCT
Lal2g0225 2 1316141 1322979 Lal8g0103 8 737095 739824 PCT