Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0089 ATGCTAGGGGAGCACCATCGATCAAATCCAACCATCCACGTACCCCCATGGCAAGATCTAACGGATGATATGTACTCTCCTTACTTATATAACGGCGTTACTGACGGCAATGCCAACGCCGGTGATTACTCTCCCTATTACATGCAGGAAGCGTTGACGGCGCTGCAGCGTTACCTTCCTTCAAACGAAGATGGTGACTCGGAATCTGAGGTTCCAGGCCGTGAATCAGACGCGCCAGTGGACGCGTACTCTTGTGACCAGTTCCGCATTTACGAGTTCAAGATACGTAAGTGCTCACGTGGTAGGTCACATGACTGGACTGAATGTCCGTACGCTCATCCCGGAGAGAAGGCTCGCCGGAGAGATCCCCGTAAGTTTCACTATTCCGGCACGGCGTGCCCTGATTTTCGTAAAGGAAATTGCAAGAGAGGTGACGCGTGTGAGTACGCACATGGAGTTTTTGAGTGCTGGCTTCACCCAGCGCGTTACCGCACGCAGCCATGCAAGGACGGTACCAGTTGCCGGAGGAGGGTTTGCTTCTTCGCTCACACGCCGGAGCAGTTAAGAATCGTTCCTAATCACAGCCCTAGAAGCATGGATTCATATGATGGATCACCTATGAAAAACGGAACGATGACGTTTTTGTCGTCTCCTGTTTCTATCTCGCCGCCGGTGAGTTCTCCGGTTGAATCACCGCCTATGTCTCCGATGGAAAGAAGCTCCATGAGTGAAATGATGGTTTCTCTGCGTAACTTGCAACTGGGGAAGTTGAAATCTATGCCTTGTAATAGAAACGTTATTCCATTGGGATTGGGGTCACCAAGAGGTTCGGTGCTCCGACCCGGGTTCATTAGCCTCCCATCTACCCCGACCCAGGTTCCGGGTCGGGGCGTTGTTAGTCACTTTGATATTTGGGATAATAGTTGTGAAGAGGAGCCTGTGATGGAGAGAGTGGAATCTGGGAGGAGTATAAGAGCAAAGATGTTTGAGAAATTGAGTAAAGAAAACTCTCTTGATGGGTCGGGTCAGGTTTCGGGTGGAGCACCGGATTTTGAGTGGGTTTCAAAGCTTGTAGATTGA 1080 0.5056 MLGEHHRSNPTIHVPPWQDLTDDMYSPYLYNGVTDGNANAGDYSPYYMQEALTALQRYLPSNEDGDSESEVPGRESDAPVDAYSCDQFRIYEFKIRKCSRGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKRGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRIVPNHSPRSMDSYDGSPMKNGTMTFLSSPVSISPPVSSPVESPPMSPMERSSMSEMMVSLRNLQLGKLKSMPCNRNVIPLGLGSPRGSVLRPGFISLPSTPTQVPGRGVVSHFDIWDNSCEEEPVMERVESGRSIRAKMFEKLSKENSLDGSGQVSGGAPDFEWVSKLVD 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0089 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 152 IPR000571 GO:0046872
Lal8g0089 359 ProSiteProfiles Zinc finger C3H1-type profile. 128 154 IPR000571 GO:0046872
Lal8g0089 359 SMART c3hfinal6 127 153 IPR000571 GO:0046872
Lal8g0089 359 SMART c3hfinal6 162 185 IPR000571 GO:0046872
Lal8g0089 359 PANTHER UNKEMPT FAMILY MEMBER 7 358 IPR045234 -
Lal8g0089 359 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 358 - -
Lal8g0089 359 MobiDBLite consensus disorder prediction 219 239 - -
Lal8g0089 359 Gene3D - 127 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0089 Lal-Chr8 654929 656008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0089 83 266 C2H2 Transcription Factor Family AT5G12850 50.495 6.57e-59 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal8g0089 zf-CCCH 1.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0089 - - aprc:113867365 551.592