Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0076 ATGGTTTGTGAGATGGAGAGTGAGTGTATTGAAGACATGGACATTGAAGGCCTCCCTTCAATGTGGCCTGAAGATATTGTAACTGATGTTGGAAAACAATTTAATATAGAAAAGCCTGGAAGGGACCAAGATATGTTAGAGGAAGTGACAATCTTAGAGGAGCCAACTATAGCTGATTTCCAACGCCTTATGGAGCTTACCAATTACACTGAGAAAGGGTCTTCTCAGTTGGCATACCTTATGAAACACTGGGAGTATAAGCAGGCCAATGCAGTACGCCTTCTTAGAGAAGAACTCGACAACCTTAACAAACAAAGGCAGGAAGTTGAGCTCAGGAAGTTGGAGATATTAGAATATGATCGATTCGAAGAGGAAAATTATGGTGGTGATAAACGCCCGGTTTCTATATTGGATGAAGTTTACTATACATGGAAGGATGTACCGATGAAGAAAAGTGATGTTGTTGTTCAAAACAAGAGAATTGAAATTGATGCTGAGTATGACACCATTGTATATTGGAAACAGCGGGCGCAGCAATTGGAAAAACAGTTGGAGGCAAGTATCCAGAGAGAGCAAGTACTTGAGGAAAAGTTGCAAGAAAGTATAGAGACTATTGAAAGACAGTCCTCACCTGTTGAAGAACTCTCCCAGATTCTCAAGAGAGCAGATAATTTCTTACATTTTATTCTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTACGCTATCGCTTTATCTATAATCATTTTCCAAGTTTGCAAGAGGAGGACATAATAGGAAAAACGGATGTCGAGATTTTCTCAGGGTCAGGGGTTAAGGAATCTCAAGATTTCAAGAGAGAAGTTATGGAAAAGGGATTACCTGCAAAAAAGGAAATTACTTTTGAGACAGAACTGTTTGGCTCAAAGATATTCTTGATATATGTAGAACCCGTCTTCAGCAAGGCAGGTGAGACAATTGGAATAAATTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAATACTCCGGGAAGAAATTGCAGTTCAGAAAGCCAAGGAAACAGAATTGAATAAAACCATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCGCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCGCGAGCAAAAACAGCTTTTGGATGTCATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAATTGGAAGCTACCAAATTCCGGCCAAGAGAGGTAGTAAAGCATGTACTCCAGACAGCTGCAGCATCGTTGCAGAAAATGTTAACCTTAGAAGGACACGTGGCAGATGATATACCTATTGAGGTCATTGGTGATGTTTTAAGGATCCGTCAAATTCTCACAAATTTAATCAGCAATGCGGTTAAGTTTACACATGAAGGCAAAGTTGGTATAAACCTTTACGTTGTGGCAGAGCCACCTTTTGCAAAAGCAGAAGGCCACCAAAATTCAAATTCGGAACAGTTAACTATTTCATCTAATGGCTTGAGAGAAGAAAAACATCCATTAACACCTCAAAGTGGTGGCAGTGAACAGAATCTTCATAATGGTCAAAATCAAAATGACCATCCTAGCCAAATTCATGTTTTTAATGATGAATGTAGATCTTCAGTTAAAAGTGAGTGTTCAATGAATGGAGATGCTGAGGAGCAAACTCATTCAACTGAAACAACCGTGTGGATATGTTGTGATGTATATGACACAGGAATTGGAATACCAGAAAAGGGCATACATACTCTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACGCTCGAAAATATGGGGGCACAGGGCTAGGACTAGCAATATGCAAACAATTGGTTGAGTTAATGGGTGGTCGTTTAACAGTGTCTAGCAAAGAACATTGTGGTTCTACCTTCACCTTCATACTTCCATACAAGGTTTCAACCACTTGTGACGATGATTCTGATGACTTTGATGTGGAGAAAAATGATGGCATGTCTGATGATACAACACAGGGCTTCTTCCAATTCCAACCACGCACTTTGGGATCTCTATTCTCTTCTAATGGATCCAGCAGGACTCAAAATATATTACCAGGTTACAGAACCTCACATAAGTTTAATGGGCTTTCAGAGAATTCTCACTCATTCCCCTCTAGTAATACTATATCATCAGAAGTGACAAGTAACACAAGTTTAGTTGAGGATGCATCATCAGTGGTTGTTGATGCTCCAGAGATGTCTGAATCACCAACGTCATCAATACCAGAAACAGAACATGAAAGTTTAGTTGACAGAAACAAACAGCACCAAGATAATACACATGCTCAGTTACAGAATGGTAATGCTGTTTTTTCTCCACTTAAGGAGGAATGTAGAGAAATGGGTGTAATAATAAACTCAGGTGAACTTCAGCATACATGTCAGGGTCAAGTGAAGGCAGGCATAACTTCCCAATGTGTTACTAGAAGCAACAACACATCATCAGAATTAAGCAAATCCACATTAAAGCCACAGATCCTTCTTGTTGAAGATAACAAGATCAATATCATGGTGACACAGTCAATGATGAAGCGGTTAGGTTATAGCATGGATGTTGTGAATAATGGAGTGGAAGCCATACGTGCAGTTCAGCACCACTCATATGACCTCATTCTAATGGATGTTTTCATGCCAGTTATGAATGGGATTCAAACAACAAAACTGATCCGGTCTTACGAGGAAGCAGGAAACTGGGATGCTGCAAGAAAAGCTGGTTTTGAGCAAGTCCTACCACCTTCAGATTATGAATGTTCCCTACCACCTAAAAAGCGTATCTGCATCATTGCGATGACAGCAAACACATTGTCAGAGAGTGCTGAAGAATGTTTTGCAAATGGTATGGACTCATTTATATCAAAACCTGTAACTTTCCAAAAATTGAAAGACTCACTTGAACAATGCCTAAGGTGA 3051 0.3959 MVCEMESECIEDMDIEGLPSMWPEDIVTDVGKQFNIEKPGRDQDMLEEVTILEEPTIADFQRLMELTNYTEKGSSQLAYLMKHWEYKQANAVRLLREELDNLNKQRQEVELRKLEILEYDRFEEENYGGDKRPVSILDEVYYTWKDVPMKKSDVVVQNKRIEIDAEYDTIVYWKQRAQQLEKQLEASIQREQVLEEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFSGSGVKESQDFKREVMEKGLPAKKEITFETELFGSKIFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAILREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQKQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGHVADDIPIEVIGDVLRIRQILTNLISNAVKFTHEGKVGINLYVVAEPPFAKAEGHQNSNSEQLTISSNGLREEKHPLTPQSGGSEQNLHNGQNQNDHPSQIHVFNDECRSSVKSECSMNGDAEEQTHSTETTVWICCDVYDTGIGIPEKGIHTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHCGSTFTFILPYKVSTTCDDDSDDFDVEKNDGMSDDTTQGFFQFQPRTLGSLFSSNGSSRTQNILPGYRTSHKFNGLSENSHSFPSSNTISSEVTSNTSLVEDASSVVVDAPEMSESPTSSIPETEHESLVDRNKQHQDNTHAQLQNGNAVFSPLKEECREMGVIINSGELQHTCQGQVKAGITSQCVTRSNNTSSELSKSTLKPQILLVEDNKINIMVTQSMMKRLGYSMDVVNNGVEAIRAVQHHSYDLILMDVFMPVMNGIQTTKLIRSYEEAGNWDAARKAGFEQVLPPSDYECSLPPKKRICIIAMTANTLSESAEECFANGMDSFISKPVTFQKLKDSLEQCLR 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0076 1016 PRINTS Bacterial sensor protein C-terminal signature 605 619 IPR004358 GO:0016310|GO:0016772
Lal8g0076 1016 PRINTS Bacterial sensor protein C-terminal signature 640 658 IPR004358 GO:0016310|GO:0016772
Lal8g0076 1016 PRINTS Bacterial sensor protein C-terminal signature 664 677 IPR004358 GO:0016310|GO:0016772
Lal8g0076 1016 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1014 - -
Lal8g0076 1016 SUPERFAMILY CheY-like 871 1016 IPR011006 -
Lal8g0076 1016 CDD HATPase_EvgS-ArcB-TorS-like 487 677 - -
Lal8g0076 1016 Coils Coil 177 208 - -
Lal8g0076 1016 CDD REC_hyHK_CKI1_RcsC-like 873 1011 - -
Lal8g0076 1016 SMART HisKA_10 371 436 IPR003661 GO:0000155|GO:0007165
Lal8g0076 1016 Gene3D - 865 1015 - -
Lal8g0076 1016 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 436 IPR036097 GO:0000155|GO:0007165
Lal8g0076 1016 SMART REC_2 871 1011 IPR001789 GO:0000160
Lal8g0076 1016 ProSiteProfiles Histidine kinase domain profile. 378 680 IPR005467 -
Lal8g0076 1016 Gene3D - 435 685 IPR036890 -
Lal8g0076 1016 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 455 677 IPR036890 -
Lal8g0076 1016 MobiDBLite consensus disorder prediction 542 570 - -
Lal8g0076 1016 CDD HisKA 370 432 IPR003661 GO:0000155|GO:0007165
Lal8g0076 1016 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155|GO:0007165
Lal8g0076 1016 Pfam Response regulator receiver domain 873 940 IPR001789 GO:0000160
Lal8g0076 1016 Gene3D PAS domain 205 335 - -
Lal8g0076 1016 Coils Coil 92 112 - -
Lal8g0076 1016 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 678 IPR003594 -
Lal8g0076 1016 SMART HKATPase_4 482 680 IPR003594 -
Lal8g0076 1016 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1014 - -
Lal8g0076 1016 Gene3D - 336 434 - -
Lal8g0076 1016 MobiDBLite consensus disorder prediction 777 803 - -
Lal8g0076 1016 ProSiteProfiles Response regulatory domain profile. 872 1015 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0076 Lal-Chr8 572615 581991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0076 1 1015 Histidine Kinase Gene Family AT5G10720 56.226 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal8g0076 HATPase_c 3.1e-26 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0076 - - gmx:100801640 1602.03