Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0041 ATGAACGACCTTCTTACTGATTCATTTGTTAATGAGGCTAATAATGGCCAACATTCTAGACAATCTGATATTGAAATGGGTTTGCAAGTTCCAAGAAGCAACTCTGATATGGGAATGGAAGCTTTTAATAAGCAGATCCATGAGGCTGATAAACAAATTGATAAGCTCTCTCTGCTACTTCAAAAGCTAAAGGAGGCTAACGAGGAATCGAAAGCTGTTACAAAAGCATCTTCCATGAAAGCCATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCATATGGTGTCAAAACAAGAATAGAAGCTATAAGCAAAGATAATCTTAATAATAGACAAAAGCCTGGTTATGAGAAGGGAACGGGGATTGACCGAGCAAGGATGAATATGACAAATGCCTTGACTAAAAAGTTTAAGGATCTCATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAAGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACCATTGATCACCTGATAGAGACAGGAAACAGTGAACAAATCTTTCAGCAGGCAATTCTAGAAGCAGGCCGAGGACAGGTTGTAAGCACAGTTGAAGAAATTCAGGAGAGACATGATGCTGTGAAAGAAATTGAGAAAAAGCTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATCGAAAGTCAGGTAAACAACGCAGTCGATCATGTCCAGAGAGGGACATCTGCGCTTCAAAGTGCTAAGAAACTTCAGAAGAATTCTCGAAAATGGATGTGTGTTGCTATCATTGTACTGTTGATAATAGTAGCCATCATAGTTGTTGGTGTTATCCAACCATGGAAGAGTAGCAAGGGCGCTTGA 933 0.3923 MNDLLTDSFVNEANNGQHSRQSDIEMGLQVPRSNSDMGMEAFNKQIHEADKQIDKLSLLLQKLKEANEESKAVTKASSMKAIKKRMEKDIDEVGKIAYGVKTRIEAISKDNLNNRQKPGYEKGTGIDRARMNMTNALTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQQAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSALQSAKKLQKNSRKWMCVAIIVLLIIVAIIVVGVIQPWKSSKGA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0041 310 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Lal8g0041 310 CDD SNARE_syntaxin1-like 208 269 - -
Lal8g0041 310 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Lal8g0041 310 Coils Coil 39 76 - -
Lal8g0041 310 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 10 301 - -
Lal8g0041 310 Pfam SNARE domain 245 297 IPR000727 -
Lal8g0041 310 PANTHER SYNTAXIN 10 301 IPR045242 -
Lal8g0041 310 SMART SynN_4 34 160 IPR006011 GO:0016020
Lal8g0041 310 Gene3D - 203 302 - -
Lal8g0041 310 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Lal8g0041 310 SMART tSNARE_6 204 271 IPR000727 -
Lal8g0041 310 CDD SynN 39 196 IPR006011 GO:0016020
Lal8g0041 310 Gene3D - 34 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0041 Lal-Chr8 362170 366304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0041 1 310 SNARE and Associated Proteins AT3G03800 59.355 1.69e-121 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0041 K08486 - gmx:100807404 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0043 25 290614 294451 Lal8g0041 8 362170 366304 LSH