Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0038 ATGAAGCAGTTTGTGGTTTTGCACTTTGTAAGTTGGATATGGGTAATCATCCTTTGTGGTGTTGTTGCTCACTGCCAAAGGCCTGAAAGTGTGAACATCGCTGCAGTTTTCACTTTTGATTCTGTCATAGGAAGAGCTGCCAAAGTTGCTATGGAAATGGCTGTTTCTGATGTTAATGCTGACCCTACAGTTCTCACTGGGACCAAACTCAACTTGATAATGAAGGATGCAGGTTGCAGTGTCTTTCTGGGATCAATTGGAGCTTTTCAGGCTCTTGAGAAAGGGGTTGCAGCCATAATTGGTCCACAATCATCTGCCATAGCTCATATGATTTCTCAAATTGCTGATGCTGTCAAAGTGCCTTTGATTTCATATGGAGCCACTGATTCAACCCTCTCCTCTCTCCAGTTTCCTTTCTTTTTACGTACTACACATAGTGATTTGGAGCAAATGACAGCAATGGCTGATCTGATTGACTTTAATGGATGGAAGGAGGTAATTGCTGTATTCTTGGATGATGATTATGGAAGAAATGGAATATCTGCTTTGGGCAATGAACTTGAAAGAAGGAGATTGAGAATTGCTTATAAGCTACGTTTGAGTATTCATTTTGATCTGGATGAAATCAATAACCTGCTCAATCAATCCAAGGTGTTCGGTCCTCGTGTGTATGTTGTTCACGTCAATCCAGATCCGAGATTGAGAATCTTTACCGTTGCGCACAAGCTTCAAATGATAGCCAATGACTATGTCTGGCTTGTCACAGATTGGCTCTTTGCCTCCCTAGATTCATTCTCCCCAGTGAATCAGACCACTCTTAGTGTTCTTCAAGGTGTTGTTGGTCTTCGTCAACACATTCCAGATTCCAGGAAAAAGAGATCTTTTGTTTCTCGGTGGGAAAAAATGCAAAAAGAAGGGGTAGCAAATACTAGCTTGAATTCCTATGGATTTTACGCTTACGATACAGTTTGGGCAGTTGCATTTTCAATTGATAAATTCATGGAGCTACATAATAATATTACCTTCTCTTTTGATAATAACTACATGTTACCACGGACAGAAGAAACTGTTATTCAGCTTGACATGCTTAAAGTTTTTGATGGCGGGTCTGATCTGGTCAACATACTGTTAGAATTAAATTTTACAGGTTTGAGTGGTCAAATTCAGTTTAGCTCAGACAGAAATATCCTAAGTGGTGGTTATGAAGTTATCAATATCAATCCCATGGCAATTACTACGGTTGGTTATTGGTATAATGATTCAGGATTTTCAGTCATGCCCCCTAAAATTCTCACAATCAAAGAACATCGAAGGTTTTTCCAAAATCAGAAGCTTGACAATATTACCTGGCCAGGTGGAAAGATTGAAAGACCACGTGGCTGGGTGATTGCTGATAACGCAAGACCACTGAGAATTGTAGTACCAAAGAGAGCAAGCTTTGTTGAATTTGTAACTGAACTGCAAGATAGTCATCAAGTTCAGGGGTACTGCATTGATATCTTCAAGAAAGCACTGGAATTTATTCCATATGATGTTCCTTATGTATTCAAGCCTGTTGGGAGTGGTATAGCAAATCCCAACTATGACACACTTGTGAAAATGGTTTCCGAAAATGTATATGATGCAATTGTCGGAGACATTGCAATTGTGACAAATCGTACTAAGATTGTAGATTTCTCTCAGCCTTTTGCATCATCTAGCCTTGTTATAGTGGCACCTATCAACAATGCAAAATCAAATACTTGGGTTTTCCTCAAACCATTCACAGCAGATATGTGGGGTGCCACTGCTGCTTCATTTATAGCAATTGCGGTGGTTATATGGATTCTTGAGCACCGAGTCAACAGTGATTTCCGTGGTCCACCTAAGAGGCAAATCGTGACAATATTTATGTTCAGCCTCTCAACATTGTTTAAGACAAATCAGGAAAAGACAGTAAGCTCACTAGCCAAAATGGTGATGATAGTGTGGCTTTTCCTATTGATGGTTATCACATCTAGCTACACTGCAAGCTTGACTTCAATTCTTACAGTGGAACAGCTTTCATCACCCATAACAGGAATTGATAGTTTGATTGCAAGTAACTGGCCTATTGGATATCAAGTAGGATCATTTGCTTATAGTTATCTGACAGAGAATCTTTATATACCAAGCTCAAGACTTGTTTCCTTAGGCTCCCCTGAGGAATATGCTATAGCTCTTCATAAAGGTCCTTCTCGTGGAGGGGTGGCAGCTATCATTGATGAGCTTCCATATGTCGACTTATTTCTATCAAAACAAACTGATTTTGGTATTATTGGACAACCATTTACCAGAGGCACTTGGGGATTTGCTTTTCCAAGAGAATCTCCTTTTGCCCTTGACATGTCTACAGCAATTTTGAAACTCTCTGAGAATGGAGAGCTTCAGAAGATACATGAAAAGTGGTTTTGTATGATGGGTTGTCCCGAAGAAAGGACAAGCAACTCTGAGCCTAACCAACTTCACTTGGTTAGATTTTGGGGTCTATATCTCTTATTTGGTGTTGTGAGTCTTGCCGCAATTGTGGTGTTTATGCTGCAAATTGTATGTCAATATGTCCGCTTCAAACAAAGACAAAAGGAAGTTGCTTCTTCATCCTCAGAATCACCATCCAGTAATTGTTATCAGGTTGTTATTAACATCTTTAACTTCATTGATAAGAAGGAAGAGGCCATCAAGAAAATGTTTACTCAAGGTGACAATCCCCACAACCCAAACTGGGATAAATAG 2751 0.3973 MKQFVVLHFVSWIWVIILCGVVAHCQRPESVNIAAVFTFDSVIGRAAKVAMEMAVSDVNADPTVLTGTKLNLIMKDAGCSVFLGSIGAFQALEKGVAAIIGPQSSAIAHMISQIADAVKVPLISYGATDSTLSSLQFPFFLRTTHSDLEQMTAMADLIDFNGWKEVIAVFLDDDYGRNGISALGNELERRRLRIAYKLRLSIHFDLDEINNLLNQSKVFGPRVYVVHVNPDPRLRIFTVAHKLQMIANDYVWLVTDWLFASLDSFSPVNQTTLSVLQGVVGLRQHIPDSRKKRSFVSRWEKMQKEGVANTSLNSYGFYAYDTVWAVAFSIDKFMELHNNITFSFDNNYMLPRTEETVIQLDMLKVFDGGSDLVNILLELNFTGLSGQIQFSSDRNILSGGYEVININPMAITTVGYWYNDSGFSVMPPKILTIKEHRRFFQNQKLDNITWPGGKIERPRGWVIADNARPLRIVVPKRASFVEFVTELQDSHQVQGYCIDIFKKALEFIPYDVPYVFKPVGSGIANPNYDTLVKMVSENVYDAIVGDIAIVTNRTKIVDFSQPFASSSLVIVAPINNAKSNTWVFLKPFTADMWGATAASFIAIAVVIWILEHRVNSDFRGPPKRQIVTIFMFSLSTLFKTNQEKTVSSLAKMVMIVWLFLLMVITSSYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYSYLTENLYIPSSRLVSLGSPEEYAIALHKGPSRGGVAAIIDELPYVDLFLSKQTDFGIIGQPFTRGTWGFAFPRESPFALDMSTAILKLSENGELQKIHEKWFCMMGCPEERTSNSEPNQLHLVRFWGLYLLFGVVSLAAIVVFMLQIVCQYVRFKQRQKEVASSSSESPSSNCYQVVINIFNFIDKKEEAIKKMFTQGDNPHNPNWDK 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0038 916 CDD PBP1_GABAb_receptor_plant 32 427 IPR044440 -
Lal8g0038 916 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 15 911 - -
Lal8g0038 916 Gene3D - 49 399 - -
Lal8g0038 916 Pfam Ligand-gated ion channel 811 842 IPR001320 GO:0015276|GO:0016020
Lal8g0038 916 SUPERFAMILY Periplasmic binding protein-like II 450 810 - -
Lal8g0038 916 Gene3D - 466 580 - -
Lal8g0038 916 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Lal8g0038 916 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 104 132 - -
Lal8g0038 916 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 235 258 - -
Lal8g0038 916 SUPERFAMILY Periplasmic binding protein-like I 25 462 IPR028082 -
Lal8g0038 916 Gene3D - 146 423 - -
Lal8g0038 916 Pfam Receptor family ligand binding region 48 408 IPR001828 -
Lal8g0038 916 CDD GluR_Plant 468 810 - -
Lal8g0038 916 PIRSF IGluLR_plant 1 913 IPR017103 -
Lal8g0038 916 Gene3D - 581 710 - -
Lal8g0038 916 Gene3D - 757 817 - -
Lal8g0038 916 SMART GluR_14 469 812 IPR001320 GO:0015276|GO:0016020
Lal8g0038 916 Pfam Bacterial extracellular solute-binding proteins, family 3 489 810 IPR001638 -
Lal8g0038 916 PANTHER GLUTAMATE RECEPTOR 3.7 15 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0038 Lal-Chr8 338652 344515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0038 15 911 Ion Channels AT2G32400 54.767 0.0 1011
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0038 K05387 - gmx:100796389 1428.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0048 25 347623 352789 Lal8g0038 8 338652 344515 LSH
Lal10g1296 10 18999932 19003564 Lal8g0038 8 338652 344515 LSH
Lal9g0385 9 2543834 2549545 Lal8g0038 8 338652 344515 PCT