Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0028 ATGGACATGATGGGAACCGACCGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTGACCATAGTGACGGTGAGATGTGGGCATTGTGCCAATTTGATATCAGTTAACATGGGAGCATCCCTTCAAGCTTTTCCTCCTCAAGACCCTCAGAAACAGAACTTAAGCTTTCAAGAACCGAGCAGCAAGGAAGTGGGATCATCATCTTCAAGATGCAATAAATATGCAGCATTTCAACCTGCTATAGAGCACCACCACCAACATAGGATTCCTCCAATTCGTCCTCCTGAGAAGAAGCAACGTGTTCCTTCTGCTTATAATCGATTTATCAAAGATGAAATCCAAAGAATCAAGGCTAGTAATCCAGATATTAGCCACAGAGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCTCATTTCCCACATATTCACTTTGGGTTAAAGCTTGATGGCAACAAGCAAACAAATCTGCAGGTTGATGGAACTCAAAAATCTAACGGATTTTACTGA 543 0.4309 MDMMGTDRVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLISVNMGASLQAFPPQDPQKQNLSFQEPSSKEVGSSSSRCNKYAAFQPAIEHHHQHRIPPIRPPEKKQRVPSAYNRFIKDEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTNLQVDGTQKSNGFY 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0028 180 Gene3D High mobility group box domain 95 153 IPR036910 -
Lal8g0028 180 PANTHER PROTEIN YABBY 6-RELATED 1 180 IPR006780 GO:0007275
Lal8g0028 180 Pfam YABBY protein 6 158 IPR006780 GO:0007275
Lal8g0028 180 SUPERFAMILY HMG-box 103 151 IPR036910 -
Lal8g0028 180 MobiDBLite consensus disorder prediction 58 80 - -
Lal8g0028 180 PANTHER AXIAL REGULATOR YABBY 2-RELATED 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0028 Lal-Chr8 275587 281530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0028 4 180 C2C2-YABBY Transcription Factor Family AT1G08465 61.413 1.68e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lal8g0028 YABBY 1.8e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0028 K25796 - gmx:100785458 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal25g0060 25 433938 444313 Lal8g0028 8 275587 281530 LSH
Lal8g0028 8 275587 281530 Lal2g0393 2 2372289 2377456 PCT
Lal8g0028 8 275587 281530 Lal9g0358 9 2389972 2396127 PCT
Lal2g0393 2 2372289 2377456 Lal8g0028 8 275587 281530 PCT
Lal9g0358 9 2389972 2396127 Lal8g0028 8 275587 281530 PCT