Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0012 ATGGCTAGGAAAAGCAACCACAAGAACATTACTACTACTCCTTGTTCTAATTCTAACGCTACACTCTCACCCACTAATGTGAAGAAGAAGAAAAGGGCACGAAAAAGCATTCCTAGAGACCCTCCTTCACAGAGAAGCTCAATCTACCGTGGTGTTACAAGGCATCGATGGACAGGTCGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCACAGAACAAGAAGGGAAGACAAGGGGCATATGATGATGAAGAAATGGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCATCCTCAATTTTCCGTTATCAAAATATGAAAACGAGCTTAAGGAGATGGAGGATCAATCCAAAGAGGAATATATTGGATCATTAAGAAGAAAAAGTAGTGGATTCTCTCGGGGAGTCTCAAAATATAGAGGCGTTGCAAGACATCACCACAATGGAAGATGGGAAGCTCGAATTGGAAGAGTCTTCGGAAATAAATATCTATATCTTGGAACTTACGCGACCCAAGAAGAAGCAGCCACAGCATATGATATGGCAGCCATAGAGCACCGTGGACTTAATGCAGTTACAAACTTTGATCTTAGTCGTTATATAAAATGGCTACGTCCTAAAGCACAAGACCAAGGACAAGATATTATTAATATCAATGAATCAATATCGTCATGCCCTATTACTACCAACACTACTGAAATAGATCAACCAAACCCTATTCCTATTCCTATTCCTATTCCTATTCATGATGATGAAGTTGAAGACGTAGGGTTTGTTTCTCATCATCAACTCAGCACAACCACCACCGATGATGAGATCACAACACAAAGATCTTCTATTAGTCATGGCACTACAACATCTTATAATTCAGCTCTTGGACTTCTTTTACAATCATCAAAATTCAAAGAAATGATAGAAATGACTTCTTCCTCTTCAGCTTCAGATTATAATAACACTAATCCATCAACTTTGGAGTCAAACTCAAACCCTCCTCGTCGTACATTCCCCGAAGATATTCAAACCTTTTTTGAAAGTCATCAAGAAGATTTGGGAACCTATATTAATGAGACTGATGACATTATCTTTGGTGACTTGACCTCAATTGCTGCACCTATTTTTCATTGTGAGCTTTAG 1161 0.3953 MARKSNHKNITTTPCSNSNATLSPTNVKKKKRARKSIPRDPPSQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQGAYDDEEMAARAYDLAALKYWGQDTILNFPLSKYENELKEMEDQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEHRGLNAVTNFDLSRYIKWLRPKAQDQGQDIININESISSCPITTNTTEIDQPNPIPIPIPIPIHDDEVEDVGFVSHHQLSTTTTDDEITTQRSSISHGTTTSYNSALGLLLQSSKFKEMIEMTSSSSASDYNNTNPSTLESNSNPPRRTFPEDIQTFFESHQEDLGTYINETDDIIFGDLTSIAAPIFHCEL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0012 386 Pfam AP2 domain 48 103 IPR001471 GO:0003700|GO:0006355
Lal8g0012 386 Pfam AP2 domain 146 196 IPR001471 GO:0003700|GO:0006355
Lal8g0012 386 CDD AP2 47 113 IPR001471 GO:0003700|GO:0006355
Lal8g0012 386 ProSiteProfiles AP2/ERF domain profile. 48 111 IPR001471 GO:0003700|GO:0006355
Lal8g0012 386 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Lal8g0012 386 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Lal8g0012 386 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 16 359 - -
Lal8g0012 386 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Lal8g0012 386 Gene3D AP2/ERF domain 48 114 IPR036955 GO:0003700|GO:0006355
Lal8g0012 386 MobiDBLite consensus disorder prediction 1 51 - -
Lal8g0012 386 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lal8g0012 386 PRINTS Ethylene responsive element binding protein signature 93 113 IPR001471 GO:0003700|GO:0006355
Lal8g0012 386 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 359 - -
Lal8g0012 386 SUPERFAMILY DNA-binding domain 47 113 IPR016177 GO:0003677
Lal8g0012 386 SMART rav1_2 48 117 IPR001471 GO:0003700|GO:0006355
Lal8g0012 386 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Lal8g0012 386 Coils Coil 112 132 - -
Lal8g0012 386 MobiDBLite consensus disorder prediction 1 26 - -
Lal8g0012 386 MobiDBLite consensus disorder prediction 319 345 - -
Lal8g0012 386 MobiDBLite consensus disorder prediction 319 344 - -
Lal8g0012 386 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0012 Lal-Chr8 197042 201101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0012 44 209 AP2-EREBP Transcription Factor Family AT5G57390 72.189 6.00e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal8g0012 AP2 5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0012 K09285 - pop:112326885 445.277