Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0011 ATGAATGTTCCCCAAAAATCCTCACTTTCATACACTTCTCTCTATACCAATCCTCTCAATGAGCTCAGGCACAGTCGTAGCTGCAGTGACTATGCTCCCTTATCCTCCTCCAAACCTGAAACCAAACATGACAACAAGGAAAATGTGGTCTCCAACAACAACAACAACAACAACAACAACAATAATAATAATAATAATAATGGGTCCTCTTCCTCTTCTTCTTTGCCTCCTAAGCAGTTCTCAAAGTCAAAGTCTTTGTCCACTAACAGGAGGAGGATTTTGAAGCCTACCTCCCTTCAGTTATGCATGCAACTAAATGAGCCTCAAAGGAGTTTGGCTTCTAACTTATGGGAACCTCCTTTTGAATCTGACAAATCTACTTCTTTCAATATTTGGGACTTCTCTGACTCTGAGGCTGCTCCTGCTTCTTCCTGGTCCACTTTGCCTAATAAGTCATTGATCTGTAGACCCTTGCCTATAGATATTGGAAGGTGTACATGTGTCATTGTGAAGGAAGCATTGCCACAAGGACTATCTGGTGGCACTTTTTATTCTCTTTACACCTATGAAGGTCAGGGAAGGCAGAATAGGAAACTAGCTGTGGCACACCACAAGCGGCGGAATGGGAGGTCTCAATTCATTGTAGCGCAGAATGTTAAAGGACTAATTTCTAATTCAGATGATAGTTTTCTTGGGACTGTAACAGCTAACATCATGGGCTCAAAGTACCGCATTTGGGATGAGGGTTACTGTCATGATTCACATAGGAAACAACCAAAACCACCTCTTGCTGTTGTAACGTTCATACCTACAATAGCAACATGTACCGGAAGTCACAGAAGCATGAGGGCCTATATACCCAAGCATCAACCTATGTCACTGAAGAACGTGACCCAGGCACAACATATTAAAGGATTGCCAATGGAGTGGGAGGGAAAATTGGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAAGATTTCAAAGCAATTTGAGCTTGACTTTAGAGATAATGGAAGAGCAGGACTAAGAATCCAAACATCAATAAAAAATTTCCAGTTGACTTCAGAGGAGAATGGGACGCAGACGAGGCTGCAGCTAGGTAGGGTTGGGAAATACAAGTTTGTGATGGACTACAGATACCCTTTCACAGGTTATCAGGCCTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCACAATCTAA 1224 0.4216 MNVPQKSSLSYTSLYTNPLNELRHSRSCSDYAPLSSSKPETKHDNKENVVSNNNNNNNNNNNNNNNNGSSSSSSLPPKQFSKSKSLSTNRRRILKPTSLQLCMQLNEPQRSLASNLWEPPFESDKSTSFNIWDFSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEALPQGLSGGTFYSLYTYEGQGRQNRKLAVAHHKRRNGRSQFIVAQNVKGLISNSDDSFLGTVTANIMGSKYRIWDEGYCHDSHRKQPKPPLAVVTFIPTIATCTGSHRSMRAYIPKHQPMSLKNVTQAQHIKGLPMEWEGKLDKVHQLFSRVPLYNKISKQFELDFRDNGRAGLRIQTSIKNFQLTSEENGTQTRLQLGRVGKYKFVMDYRYPFTGYQAFCICLASIDAKLCCTI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0011 407 PANTHER TUBBY-RELATED 6 405 - -
Lal8g0011 407 MobiDBLite consensus disorder prediction 26 89 - -
Lal8g0011 407 SUPERFAMILY Tubby C-terminal domain-like 142 406 IPR025659 -
Lal8g0011 407 Pfam Tub family 156 400 IPR000007 -
Lal8g0011 407 MobiDBLite consensus disorder prediction 48 89 - -
Lal8g0011 407 PANTHER TUBBY-LIKE PROTEIN 8 6 405 - -
Lal8g0011 407 PRINTS Tubby superfamily signature 230 254 IPR000007 -
Lal8g0011 407 PRINTS Tubby superfamily signature 343 359 IPR000007 -
Lal8g0011 407 PRINTS Tubby superfamily signature 363 382 IPR000007 -
Lal8g0011 407 PRINTS Tubby superfamily signature 384 406 IPR000007 -
Lal8g0011 407 Gene3D Tubby Protein; Chain A 146 406 IPR025659 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0011 77 300 TUB Transcription Factor Family AT1G16070 56.195 2.96e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal8g0011 Tub 1.8e-38 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0011 K19600 - vvi:100248428 522.316