Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal7g1489 | ATGTCAGAAATGATGATGGATCCAAGCAAGCTGCACTTGAAGAAGGAGCTTACTCAAATTCGAAAAGCAGCTCGTGTGTTGAGAGATCCTGGCACAACCTCTTCTTGGAAGAAATCACCCCTTACTTCCTCTAGATCTGTTGCACTTCCACCTTCTGCATGTAACAACAAGAATACAGGTTCTCAACTTGTTTCTCATTTTTCTGTGAATGAGGAAGACAAGAGTGTGTTCTTGTATAATTGGAAAAACAATGAGCAAGTAGATGTAGATGAAGATGAAGATGGATCTTGGTCACTTTTGGGAGATAGCTTGAGTGATGCTAGAAATGGTTTTGACTCAAAGAGTGACACTTACTTAGGCATCTTCAGATGTGGTGATGCAGCAATCGCAACACCATCATCTGCCATCAAGAAAAAAGAGAGTAAGAAACCCAAACCCCATTCTTCACATTTGGATTTTTTAGACAAATTTCAACAACATTCACAACACACCAGTCTCAATCTAGCTGCTAATATTAGTTCAAGGTCCAAGGCATTGCCTTTTAGTAGGGATAACTCTGTTGACCACTCTGATAATGATACTGAAGAAGATTACTCTAATAATTCTGAGCATGTTACAAGAGTTTTGAGGGCTTCTCCTTTGCTTCTCAAATTCAAGGGTAAAAATTTGTTGAGAAGAAGAAGTAGAAGAAGCACTAAAGAGGACTCTTCTTATTCTTATAGTACTCCTGCATTGTCAACCAGTTCCTACAATAGGTACCCTCACCGTTATCCTAGCACTGTTGGATCCTGGGATGCCACCACAACTTCAATCAACGACGGGGATGATGATGACAATGATGATCATTTGGACTTTCCCGGTCGCCAAGGATGTGGCATTCCTTGCTATTGGTCTAAGAAGACTCCGAAATATCGTGGCTCGTGTGGGAGTTGTTATTCTCCTTCACTTTCAGATACTTTAAGGAGAAAAGGAAGCAGTATACTCTGTGGGAGTCAAAATATTTATCCAAGATACCAAAGATCCTCTTCAGCCTGGCACAAGCGCAGAATTTCCTTGAGGAGTGCTCAAGGTGTTATTCCATTGCTCACCAACAGCGGTGATGTCAGAGGAGGTTCATCCATAGGAACTGGCCATAGTGATGATGAACTTTCTACCAACTTTGGGGAGCTTGATCTTGAGGGCTTGAGCCGACTGGATGGGAGAAGGTGGTCATCAAGTTGTAGGAGTCATGAGGGATTGGAGATTGTTGCTCTCAATGGGGAGGGGGAGGACGAAGGCACACCAGAAAATAGTAGGAGTTTCAGTCAGAAGTATAAGCCTATGTTCTTTGGTGAAGTAGTTGGGCAGAATATTGTGGTTCAGTCACTTATCAATGCTGTTTCGAGGGGACGAATTGCTCCAGTTTATCTTTTTCAAGGTCCGCGCGGGACCGGTAAAACATCAACTGCCAGAATATTTGCTGCTGCCTTGAACTGTGTGTCTCCCGATGAGAGTAAGCCTTGTGGATACTGCAGGGAATGTTCTGATTTCATTTCTGGCAAGAATAGTGATCTACTTGAAGTTGATGGAACCAATAAGAAAGGAATTGATAGAGCTAGATATCTATTGAAAAGATTGCCAATTGGGTCATCATCAGCCTCCTCACGATATACAATTTTTGTCATTGATGAGTGTCACTTGTTACCCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTCGAAGAACCACCTCAGCGGGTTGTGTTCATATTTATAACATCTGATCTTGACAATGTGCCACGGGCAATACAATCTAGATGCCAGAAGTATATTTTTAACAAAATTAAGGATGCAGATATTGTTGCTAGGTTAAGGAAAATATCTGCTCAGGAGAACCTTGATGTTGAAATAGATGCATCGGACCTCATTGCTATGAATGCAGATGGCTCACTTCGAGATGCAGAAACAATATTAGAGCAGCTTAGCTTGCTGGGAAAAAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGTTAGCATTGTCATCAGACACTGCAGAGACAGTGAAAAGAGCCAGGGAATTGATGGACTCTGGAATTGATCCAATGGTTTTAATGTCTCAACTAGCTGGCCTTATTATGGACATCATTGCTGGATCATATACTGTCATTGATGCCAAACATGATGATTCATTCTTTGGTGGTCGCAGATTGAATGAATCAGAGTTGGAGAGGTTAAAACATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTCACTGCAACTCTGTTGCAGCTTGGTTCTATGCCTTCTCCAGATATTACTCAGTCAGGCAGCAGCAGCAGCAGCAGACAGAGCTGTAAGACAGCTGAAGGTGATCCATCTAGTGCTTCAAGAGACTTTAGTGCTTGCAAGCATAAGTCAGACCTTCAATATATGCCTCGAAACTCAACATCACCCCCTGCGTCCCAGCAAAAAGCACTTAATGGCAATTCCAGCCACCAAAAGGATGTATCCTCAAAGATTGATGGTTTTAGCTTGAAATCGAAACCGTCAAATAACTTGGTCATAGATGATGGCTCCACAATTGTCTCATCTGATGGTCTTATGGTCGGGAATATGATGCTTAGATGCATTGATTCGGGGAAGTTATATGATATATGGGCACGATGTATTGGGAGATGTCACTCTAAGACATTGAGGCAGCTGCTACATGATCATGGAAAGCTTGTGTCCATATGTGATGTTGAAGGTTTTTTGGTAGCATATGTTGCATTTGGGGATGGAGATATTAAACGTAGGGCTGAGAGGTTTTTGAGAAGTATTACAAACTCCATGGAAATGGTTATTAGATGCAATGTGGAGGTCAGAATTATCCACTTGCCAGATGGTGAAGGTGAAAATCAAGTCAATCTACCTGGTCTAAAGCAGGCAGAGCCTACAGTAGCAAATGAGAAGGAACAAAGAGGTCCTATGAGTGGAACAGGGACTCATTCTAGCTTCCCTCCTTTACTGGATGAAAACCTTCAATGTGTTATCGATCCGTCAGATATTCTGACTGAAGGAAATGGTAGTGTGATGGAGAAGAGACAGTATAATCCAATGCAGAGAATTGAATCCATCATTCGTGAGCAGAGACTGGAAACTGCATGGTTACAGGCTGTTGAAAAGGGTTCCCCTGGATCTTTGAATCGTTTGAGACCTGAGAAGAATCAAGTCCTGCCACAAGATGCTATCTATTGTATAGACCAGAAGGAGTCCACCGTGGATTCAATGAGATTTTCCTCTCAGCATCGGGAAGATGACCTGAGTAATGAACTCAAAATTTTGAGTGTTAAGAATGGAAAGTTCCTACAGAAGGATCAGATCTGCAGAAGGGCAGATCGATACCCCATGTCCCCGAGTTTATTGCATGACAGCAGTTTAGCAACAAGTTCTGGCAAAGACAACCTGGGATATGAATCGAGCTCTGGAGCTGGCTGTTGTGGATTTTTATGCTGGAAAAATTTGGAGCCTAGAAGGGTTGTGAAGGTAAAAGGTGGTGGTACCGCTGTTGGAGTTGTACGTAAAGAGGGGCGTTTTACGTTGTTTGGTGAGTGTGGTAAGCCAAAGAAAAAGGACTTGAGAAGATAA | 3681 | 0.4233 | MSEMMMDPSKLHLKKELTQIRKAARVLRDPGTTSSWKKSPLTSSRSVALPPSACNNKNTGSQLVSHFSVNEEDKSVFLYNWKNNEQVDVDEDEDGSWSLLGDSLSDARNGFDSKSDTYLGIFRCGDAAIATPSSAIKKKESKKPKPHSSHLDFLDKFQQHSQHTSLNLAANISSRSKALPFSRDNSVDHSDNDTEEDYSNNSEHVTRVLRASPLLLKFKGKNLLRRRSRRSTKEDSSYSYSTPALSTSSYNRYPHRYPSTVGSWDATTTSINDGDDDDNDDHLDFPGRQGCGIPCYWSKKTPKYRGSCGSCYSPSLSDTLRRKGSSILCGSQNIYPRYQRSSSAWHKRRISLRSAQGVIPLLTNSGDVRGGSSIGTGHSDDELSTNFGELDLEGLSRLDGRRWSSSCRSHEGLEIVALNGEGEDEGTPENSRSFSQKYKPMFFGEVVGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVSPDESKPCGYCRECSDFISGKNSDLLEVDGTNKKGIDRARYLLKRLPIGSSSASSRYTIFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRAIQSRCQKYIFNKIKDADIVARLRKISAQENLDVEIDASDLIAMNADGSLRDAETILEQLSLLGKRITTSLVNELVGVVSDEKLLELLELALSSDTAETVKRARELMDSGIDPMVLMSQLAGLIMDIIAGSYTVIDAKHDDSFFGGRRLNESELERLKHALKLLSEAEKQLRTSSERSTWFTATLLQLGSMPSPDITQSGSSSSSRQSCKTAEGDPSSASRDFSACKHKSDLQYMPRNSTSPPASQQKALNGNSSHQKDVSSKIDGFSLKSKPSNNLVIDDGSTIVSSDGLMVGNMMLRCIDSGKLYDIWARCIGRCHSKTLRQLLHDHGKLVSICDVEGFLVAYVAFGDGDIKRRAERFLRSITNSMEMVIRCNVEVRIIHLPDGEGENQVNLPGLKQAEPTVANEKEQRGPMSGTGTHSSFPPLLDENLQCVIDPSDILTEGNGSVMEKRQYNPMQRIESIIREQRLETAWLQAVEKGSPGSLNRLRPEKNQVLPQDAIYCIDQKESTVDSMRFSSQHREDDLSNELKILSVKNGKFLQKDQICRRADRYPMSPSLLHDSSLATSSGKDNLGYESSSGAGCCGFLCWKNLEPRRVVKVKGGGTAVGVVRKEGRFTLFGECGKPKKKDLRR | 1226 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal7g1489 | 1226 | MobiDBLite | consensus disorder prediction | 225 | 251 | - | - | |
Lal7g1489 | 1226 | MobiDBLite | consensus disorder prediction | 28 | 54 | - | - | |
Lal7g1489 | 1226 | CDD | AAA | 447 | 605 | - | - | |
Lal7g1489 | 1226 | MobiDBLite | consensus disorder prediction | 179 | 204 | - | - | |
Lal7g1489 | 1226 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 679 | 780 | IPR008921 | GO:0003677|GO:0006260 | |
Lal7g1489 | 1226 | Gene3D | - | 672 | 786 | - | - | |
Lal7g1489 | 1226 | Gene3D | - | 425 | 606 | IPR027417 | - | |
Lal7g1489 | 1226 | PANTHER | PROTEIN STICHEL-LIKE 1 | 172 | 1163 | - | - | |
Lal7g1489 | 1226 | Coils | Coil | 744 | 771 | - | - | |
Lal7g1489 | 1226 | Gene3D | - | 609 | 671 | - | - | |
Lal7g1489 | 1226 | MobiDBLite | consensus disorder prediction | 182 | 203 | - | - | |
Lal7g1489 | 1226 | MobiDBLite | consensus disorder prediction | 997 | 1017 | - | - | |
Lal7g1489 | 1226 | TIGRFAM | dnaX_nterm: DNA polymerase III, subunit gamma and tau | 433 | 782 | IPR012763 | GO:0003887|GO:0005524|GO:0006260|GO:0009360 | |
Lal7g1489 | 1226 | MobiDBLite | consensus disorder prediction | 785 | 861 | - | - | |
Lal7g1489 | 1226 | MobiDBLite | consensus disorder prediction | 785 | 812 | - | - | |
Lal7g1489 | 1226 | Pfam | DNA polymerase III, delta subunit | 448 | 608 | - | - | |
Lal7g1489 | 1226 | MobiDBLite | consensus disorder prediction | 235 | 251 | - | - | |
Lal7g1489 | 1226 | CDD | HLD_clamp_pol_III_gamma_tau | 608 | 671 | IPR045085 | - | |
Lal7g1489 | 1226 | MobiDBLite | consensus disorder prediction | 32 | 54 | - | - | |
Lal7g1489 | 1226 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 435 | 658 | IPR027417 | - | |
Lal7g1489 | 1226 | MobiDBLite | consensus disorder prediction | 827 | 861 | - | - | |
Lal7g1489 | 1226 | Pfam | DNA polymerase III subunits gamma and tau domain III | 662 | 782 | IPR022754 | GO:0003887 | |
Lal7g1489 | 1226 | SMART | AAA_5 | 465 | 627 | IPR003593 | - | |
Lal7g1489 | 1226 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 172 | 1163 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal7g1489 | Lal-Chr7 | 19611523 | 19618559 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal7g1489 | 429 | 723 | Core DNA Replication Machinery Family | AT1G21690 | 25.000 | 7.33e-14 | 72.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal7g1489 | - | - | gmx:100814391 | 1702.57 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal14g2006 | 14 | 18962640 | 18975309 | Lal7g1489 | 7 | 19611523 | 19618559 | LSH |