Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1484 ATGAACATAATGAATGAGACAGGGTTGAAGCTATCAGTGGGAGCAGGTGAGAACATTAACAACCAATCATCATCAGCAGCAACAGAAGATAATGAATGCATGGTGAGGGAGCAAGATCGTTTCATGCCAATTGCAAATGTGATACGAATAATGAGGAAGATACTGCCACCACATGCAAAAATATCAGATGATGCAAAAGAAACAATACAAGAGTGTGTGTCTGAGTACATAAGCTTCATAACAGGTGAAGCCAATGAGCGTTGCCAAAGGGAACAACGCAAAACTATCACTGCAGAAGATGTGCTTTGGGCTATGAGCAAGCTTGGCTTTGATGACTACATTGAACCTCTCACAATCTACCTTCACAGGTACCGTGAGTTGGAGGGTGAGAGAAGCTCAATGAGGGGTGAAGCAGTTGGAAAGAGGAGTGCATCTACTGGTAGTGCTAGTGTGGAATATGGGACGACACTTGGTGTTGCTACTGCTTTTGTGCCACAATTTCATCATCATCATCACTCAAATGGCTATTATGATCATGTTTCTGCTGTTATGGGGAATTACATGAGGGATGCTGCATCAAACAATCATAGTAATAATAATAATAATAATAACAACAACAACAACAACAATAATGCTGCTGCAACAATCACAAATGCTGATCAACCAAGTGGCCGCTAG 678 0.4145 MNIMNETGLKLSVGAGENINNQSSSAATEDNECMVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTIYLHRYRELEGERSSMRGEAVGKRSASTGSASVEYGTTLGVATAFVPQFHHHHHSNGYYDHVSAVMGNYMRDAASNNHSNNNNNNNNNNNNNNAAATITNADQPSGR 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1484 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 19 206 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lal7g1484 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 41 105 IPR003958 -
Lal7g1484 225 MobiDBLite consensus disorder prediction 190 225 - -
Lal7g1484 225 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Lal7g1484 225 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Lal7g1484 225 PRINTS CCAAT-binding transcription factor subunit A signature 107 125 - -
Lal7g1484 225 SUPERFAMILY Histone-fold 38 137 IPR009072 GO:0046982
Lal7g1484 225 ProSitePatterns NF-YB/HAP3 subunit signature. 72 88 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lal7g1484 225 Gene3D Histone, subunit A 29 152 IPR009072 GO:0046982
Lal7g1484 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 19 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1484 Lal-Chr7 19575445 19576213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1484 18 176 CCAAT-HAP3 Transcription Factor Family AT5G47670 67.665 3.70e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lal7g1484 CBFD_NFYB_HMF 6.5e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1484 K08065 - gmx:100800011 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1484 7 19575445 19576213 Lal19g1545 19 17661035 17661762 LSH