Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1460 ATGGGAATATCGTGGAGTAACAATAGCAGAAGAAGAAATAATCATCCTTATCCTCTACTTCCTCCTCCTCCACCACACCCTTATTATTACCCACCACCACCTCCTCCTCCTCCACACGGTTACTATTATAACTCAACGAACCCTCTTCCTCATAGTCACACCCCCCAATCTTACTATTACTCACCATCATCATCATCATCATCATCTGATCATCCTTTCTATTCGAATCAACAGCATGAACGTGGTTGGAGTACGTTTACTCCCCCAATTTGTGGTGATACAGTATCAGCACCACCACCACCCTATGTTGACCATCAAACTGCAAAGAAGATTAGGAATAATGTCAATTTACATAAACATACTCTCACTCTTCAACTCGATCCACTCAACCCCAATCATCACTTGCTTTCTTTCGTTTTTGACGCCCTCTTTCATGGAAGCATTACTATCTTCTACTTTGCCAAAGAGGAAGAACAATGTAGATTTATTCCACTATACCCTGATGCATTTGAGCCAATCACATTCCCCTTTCAGAAAGGAGCTGGACAGAAATTTTGTCAGCCTTCAGGAACTGGCATTGACCTGGGTTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCGCCTGGGGAAGATGTATTTCCTCTTGTAATATGTGCTGAAACACGTGCCGGAACTCCTTCAGCAGATGAAAATCCTAGCCAGGGTTCCATGCTAGATTCATCCCCTCACATGCAAATAACTCAAGCCGTCTTAGAGAAAAGCAATGGTGGTGATCCTTTCCAGGTAAAAGTAGTCAGGCAGATTCTGTGGATTGACAATGTTCGTTATGAGCTGAGAGAGCTATATGGCATAGGAGGATCAACAACAGCAGATTTTGATGATAATGATCCTGGTAAAGAATGTGTAATATGCATGACTGAACCAAAGGACACCGCTGTCTTACCTTGCCGACATATGTGCATGTGCAGTGAGTGTGCCAAAGCTCTGCGGCTTCAATCAAACAAATGCCCTATTTGCCGCCAAGCTATTGAGGAACTTATAGAGATCAAGATAAGTAAGGGTGACCAGTGA 1071 0.4314 MGISWSNNSRRRNNHPYPLLPPPPPHPYYYPPPPPPPPHGYYYNSTNPLPHSHTPQSYYYSPSSSSSSSDHPFYSNQQHERGWSTFTPPICGDTVSAPPPPYVDHQTAKKIRNNVNLHKHTLTLQLDPLNPNHHLLSFVFDALFHGSITIFYFAKEEEQCRFIPLYPDAFEPITFPFQKGAGQKFCQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETRAGTPSADENPSQGSMLDSSPHMQITQAVLEKSNGGDPFQVKVVRQILWIDNVRYELRELYGIGGSTTADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQAIEELIEIKISKGDQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1460 356 SUPERFAMILY RING/U-box 300 346 - -
Lal7g1460 356 MobiDBLite consensus disorder prediction 16 43 - -
Lal7g1460 356 MobiDBLite consensus disorder prediction 45 64 - -
Lal7g1460 356 MobiDBLite consensus disorder prediction 1 64 - -
Lal7g1460 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 350 IPR013083 -
Lal7g1460 356 SMART ring_2 301 339 IPR001841 -
Lal7g1460 356 PANTHER MAHOGUNIN 1 355 IPR045194 GO:0061630
Lal7g1460 356 ProSiteProfiles Zinc finger RING-type profile. 301 340 IPR001841 -
Lal7g1460 356 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 300 340 IPR045195 -
Lal7g1460 356 Pfam Zinc finger, C3HC4 type (RING finger) 299 345 - -
Lal7g1460 356 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1460 Lal-Chr7 19400038 19403009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1460 102 356 C3H Transcription Factor Family AT3G06140 62.500 1.93e-106 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1460 - - adu:107465273 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1460 7 19400038 19403009 Lal7g1460 7 19400038 19403009 ECH