Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1446 ATGCCAAGGTATCGAAGCCGTAGCAGAAGCTACAGCCCTCGCCGGCGTAGCCCTACACCACCGCGCCGTGAAACCCGTTCACACAGAGACCGTCGCTCACCACTCCCTTCAGGGTTACTTGTTCGTAATCTTCCACTTGATGCTAGACCCGAAGATCTTTGGGGTCCATTCGAGCGATTTGGTCCTGTCAAAGATGTTTATCTTCCCAAAAATTACTACACTGGTGAGCCTCGTGGTTTTGGATTTGTGAAATATCGATATGGTGAGGATGCAGCTGAGGCAAAGCAACAGCTTGATCATACTATCATTGGTGGACGTGAAATCAGAATTGTCTTTGCTGAAGAAAATAGAAAAACTCCTCAAGAAATGCGTGTTACTTCTCGTGGAAGTGATCGACATGGAGGTGGGAGAAGGAGGCATCGTTCAAGATCCAGAACACCTAGACGCCGTTATCATTCCTACTCTCGGTCTCCGTCTCCAACCAGGGATTACTCAAGGGATCGAAGGGGTAGGGATGATTATTATTCTCCCAAGCAAGCGAGGTCTTATTCTAGGTCTCAATCTCCTAGTGGTGGGAAGGACTATAGGAGGTCCCCACATCCCAGGGAGAATGGTCGGAGTCCTAGTGACAAGAGGAATCTTGCACCTAGCAGATCAAGGTCTTATTCTAGGTCTCCTCCTAGTCGTGGGAAGGAGCATAGGAGATCCCCTAGTCCCAGGGAGAATGATCAGAGTCCTAATGACGAGAGGGAGCGTGCACCCAGCAAATCACCAAGTCCTAGAGTCCGTCGAGGTCTCGCTCGCGATCATACAGCCCACGCTGATTACATGCTTTTGTGGTGGTCACTGGTCAATGCTGTCTTTCCTATGGCCCATATTGTAGCTAAACTGTGA 894 0.4955 MPRYRSRSRSYSPRRRSPTPPRRETRSHRDRRSPLPSGLLVRNLPLDARPEDLWGPFERFGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQQLDHTIIGGREIRIVFAEENRKTPQEMRVTSRGSDRHGGGRRRHRSRSRTPRRRYHSYSRSPSPTRDYSRDRRGRDDYYSPKQARSYSRSQSPSGGKDYRRSPHPRENGRSPSDKRNLAPSRSRSYSRSPPSRGKEHRRSPSPRENDQSPNDERERAPSKSPSPRVRRGLARDHTAHADYMLLWWSLVNAVFPMAHIVAKL 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1446 297 MobiDBLite consensus disorder prediction 133 152 - -
Lal7g1446 297 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 3 224 - -
Lal7g1446 297 MobiDBLite consensus disorder prediction 210 224 - -
Lal7g1446 297 Gene3D - 6 152 IPR012677 -
Lal7g1446 297 MobiDBLite consensus disorder prediction 161 178 - -
Lal7g1446 297 MobiDBLite consensus disorder prediction 1 38 - -
Lal7g1446 297 MobiDBLite consensus disorder prediction 114 132 - -
Lal7g1446 297 MobiDBLite consensus disorder prediction 195 209 - -
Lal7g1446 297 SMART rrm1_1 38 111 IPR000504 GO:0003723
Lal7g1446 297 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 224 - -
Lal7g1446 297 MobiDBLite consensus disorder prediction 17 35 - -
Lal7g1446 297 SUPERFAMILY RNA-binding domain, RBD 39 144 IPR035979 GO:0003676
Lal7g1446 297 MobiDBLite consensus disorder prediction 179 193 - -
Lal7g1446 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Lal7g1446 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Lal7g1446 297 MobiDBLite consensus disorder prediction 114 266 - -
Lal7g1446 297 MobiDBLite consensus disorder prediction 225 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1446 Lal-Chr7 19323475 19326631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1446 41 99 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.83e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1446 K12900 - gmx:100788749 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1953 14 18673509 18677602 Lal7g1446 7 19323475 19326631 LSH