Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1430 ATGTCATCCACTTCAGGTGCATCATCCTTCAAAGGATCATATGAACCAAACAAAACTGAGATATGCTCATCACTAGTTCTTCAAAGAAACACATGTCCTTCTGGTGAGAGAAGAGGGAGAAGAAAGCAATCAGAACCAGGAAGGTTTCTTGGAGTTAGGAGGAGACCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACAAAAGAGAGACATTGGCTTGGAACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGATAGAGCTGCTCTCTCCATCAAAGGAAGCCAAGCTAGAACCAACTTTGTTTACTCAGATAATATCAACTTTCACACTCTTGTTACTTCACCAATGGATCTTCAACTTCAACCTCTCTTGCCACCTTCACAGGTTATCACTGCTAATACTCATACCAAACAACCAACCAATCAAAACACTAACTCTCATCACACTCAAAACCCTTCATTCAACAATGACTATATGTGTGTTGCTGAAACTGCATATGGTTCAGTTCAGGATGATAATTTCTTATTTTCCAATGACTCTAACTCTGGATATCTTGAATGCATTGTTCCTGATAATTGTTTTAGACCTGGTTCTGGTTCCATTACCAACAGTTCAAACTCAAGAAATAGCATTTCAAGTGCTCCAGGTGATGATCAAAAGGTAAGCTCATTTAACAACACAAGCTCCATTGAGAGTCAATTACTTCTTGGTTCATTATACCAAGAAGCCTCTTATAGCATGTCAGAATTTTCTTATCCAAGTGAAGGATCATGGGATAACCAGCAACAAAATTCATGGGATTGGAATTCAAGTGAACTTTCACTCATATATAACAACAACAATAATAACAACACATTAAGGGTTGAGCATGATGGGTGCATGGATCATACTACATTGTACAATGAGTATGAGTATCCCAATATCACTGACACTAGTCAAAGCTATGGGCTAATGAATCAAACTGCATCTTCAACTACCTGTTTTCCACCCTTTGGGGACGTAGACTTGGGATACCATCCACTCTTCTGA 1041 0.3919 MSSTSGASSFKGSYEPNKTEICSSLVLQRNTCPSGERRGRRKQSEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSIKGSQARTNFVYSDNINFHTLVTSPMDLQLQPLLPPSQVITANTHTKQPTNQNTNSHHTQNPSFNNDYMCVAETAYGSVQDDNFLFSNDSNSGYLECIVPDNCFRPGSGSITNSSNSRNSISSAPGDDQKVSSFNNTSSIESQLLLGSLYQEASYSMSEFSYPSEGSWDNQQQNSWDWNSSELSLIYNNNNNNNTLRVEHDGCMDHTTLYNEYEYPNITDTSQSYGLMNQTASSTTCFPPFGDVDLGYHPLF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1430 346 MobiDBLite consensus disorder prediction 34 49 - -
Lal7g1430 346 MobiDBLite consensus disorder prediction 204 228 - -
Lal7g1430 346 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lal7g1430 346 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Lal7g1430 346 MobiDBLite consensus disorder prediction 31 50 - -
Lal7g1430 346 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Lal7g1430 346 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF086 10 344 - -
Lal7g1430 346 Pfam AP2 domain 51 97 IPR001471 GO:0003700|GO:0006355
Lal7g1430 346 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Lal7g1430 346 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 344 - -
Lal7g1430 346 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Lal7g1430 346 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
Lal7g1430 346 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1430 Lal-Chr7 19230066 19231106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1430 3 252 AP2-EREBP Transcription Factor Family AT5G18560 38.436 1.59e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal7g1430 AP2 4.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1430 - - lang:109362072 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1948 14 18655267 18656250 Lal7g1430 7 19230066 19231106 LSH
Lal7g1430 7 19230066 19231106 Lal5g1389 5 16552485 16553432 PCT
Lal7g1430 7 19230066 19231106 Lal3g0344 3 2265848 2266792 PCT
Lal5g1389 5 16552485 16553432 Lal7g1430 7 19230066 19231106 PCT
Lal3g0344 3 2265848 2266792 Lal7g1430 7 19230066 19231106 PCT