Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1429 ATGGAACGCGCCAGCGAAGGGTCAGAGTCTGATCCGTCACCGGAATGGGGATACCAAGAGTCATCAAGGCAAGATGGTGAATCATACCCTCAGCGACCTGGTGAGGCTGATTGTATCTACTTTCTCAACAACGGGTTTTGTGGCTATGCCTCTCGATGCCGCTTCAATCATCCACGTCCACTAGTTACTGGAGCTGCAAGGTCTGGATTAGGGGAGCATCCAGAACGAGTTGGTCAGCATGTTTGCCAGTATTATATGAGAACGGGATCATGCAAATTTGGCTCTTCCTGCAAGTACCACCATCCCAGGCAGGGAGCAGGCATTGCTACCCTTGTGTCACTAAATTATTATGGATATCCGTTGCGAACGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTACAACTTGTAAATTTCATCATCCACAGCCTGTGGACGTCCAAATTACAGCGCCACCACCAGTTCCCCCACTTTCACCTATGCATGTACCTTCACCATTATATCCAAATGTACAGCCCCGTTCTGGTCCTTCATCACAACAATATGGTGTACTGGTTGCAAAGCCACCTTTGCTGCCTGGCTCACTAGTTCAGGGCCCCTATGGGCCTATGGTAGTGTCCCCTACCACGGTTCCTTTTTCTGGGTGGGGTCCTTATCAGGCTCCTGCAACAAGCCCAGTATTTCCTTCCACTACTCTGTCTAATGTTGGTTCAACACAGTTTTATGGGATTTCGCAGCTCCCTTCACCAGAGACTGCGTATGCTGGGCCTTATCAGCCTTCTGTTTCCTTCATTAGTCCTTCTGGCAGTAGTCAGAAGGAGAACTCATTGCCAGAAAGGCCTGATCAACCTGAATGTCAGTATTACCTGAAAACAGGGGAGTGTAAATTTGGTCCATCATGTAGATATCATCATCCAGCAGACATGAGTGCTTCAAAAGCGAACGTGATCCTTAGTCCTATGGGTCTTCCATTGCGCCCGGGGACGTCAGTTTGCACTCATTATACCCAACATGGAATTTGTAAGTTTGGTCCTGCATGTAAATTTGATCATCCTATGGGATCATTAAGTTATAGTCCTTCTGCATCTTCCCTAGCTGACATGCCAGTTGCACCCTATCCTGTGAGTTCCTCACTTGGTACTCTTGCCCCGTCATCTTCATCATCAGAGTTGCAGCCTGAACTTGTCTTGGGATCCAGCAAGGAGCCTGCTTCATCCAGAATGTCTTCATCACTAAGCACATCAACTGGATCAGTTGGCTTGAGCACATCAACTGGTGGACCAATTTCTCATTCAGGCACCGAACCATATGTTCAGAGTTCCAGTTCTTTAGCAACTATCAATGCTACCAAGAGTAGCACTGTCTCTTACACCTCAAGCTAA 1401 0.4754 MERASEGSESDPSPEWGYQESSRQDGESYPQRPGEADCIYFLNNGFCGYASRCRFNHPRPLVTGAARSGLGEHPERVGQHVCQYYMRTGSCKFGSSCKYHHPRQGAGIATLVSLNYYGYPLRTGEKECSYYVKTGQCKFGTTCKFHHPQPVDVQITAPPPVPPLSPMHVPSPLYPNVQPRSGPSSQQYGVLVAKPPLLPGSLVQGPYGPMVVSPTTVPFSGWGPYQAPATSPVFPSTTLSNVGSTQFYGISQLPSPETAYAGPYQPSVSFISPSGSSQKENSLPERPDQPECQYYLKTGECKFGPSCRYHHPADMSASKANVILSPMGLPLRPGTSVCTHYTQHGICKFGPACKFDHPMGSLSYSPSASSLADMPVAPYPVSSSLGTLAPSSSSSELQPELVLGSSKEPASSRMSSSLSTSTGSVGLSTSTGGPISHSGTEPYVQSSSSLATINATKSSTVSYTSS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1429 466 MobiDBLite consensus disorder prediction 1 30 - -
Lal7g1429 466 MobiDBLite consensus disorder prediction 12 28 - -
Lal7g1429 466 MobiDBLite consensus disorder prediction 383 466 - -
Lal7g1429 466 ProSiteProfiles Zinc finger C3H1-type profile. 81 104 IPR000571 GO:0046872
Lal7g1429 466 SUPERFAMILY CCCH zinc finger 332 362 IPR036855 GO:0046872
Lal7g1429 466 MobiDBLite consensus disorder prediction 384 401 - -
Lal7g1429 466 ProSiteProfiles Zinc finger C3H1-type profile. 122 150 IPR000571 GO:0046872
Lal7g1429 466 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 2 456 - -
Lal7g1429 466 Gene3D - 109 158 - -
Lal7g1429 466 SUPERFAMILY CCCH zinc finger 36 59 IPR036855 GO:0046872
Lal7g1429 466 SUPERFAMILY CCCH zinc finger 290 314 IPR036855 GO:0046872
Lal7g1429 466 SMART c3hfinal6 332 359 IPR000571 GO:0046872
Lal7g1429 466 SMART c3hfinal6 286 313 IPR000571 GO:0046872
Lal7g1429 466 SMART c3hfinal6 76 103 IPR000571 GO:0046872
Lal7g1429 466 SMART c3hfinal6 32 59 IPR000571 GO:0046872
Lal7g1429 466 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Lal7g1429 466 PANTHER PROTEIN PHOSPHATASE RELATED 2 456 - -
Lal7g1429 466 MobiDBLite consensus disorder prediction 408 466 - -
Lal7g1429 466 Gene3D - 282 370 - -
Lal7g1429 466 Gene3D - 30 104 - -
Lal7g1429 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 34 59 IPR000571 GO:0046872
Lal7g1429 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 312 IPR000571 GO:0046872
Lal7g1429 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 103 IPR000571 GO:0046872
Lal7g1429 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 333 359 IPR000571 GO:0046872
Lal7g1429 466 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 149 IPR000571 GO:0046872
Lal7g1429 466 ProSiteProfiles Zinc finger C3H1-type profile. 286 314 IPR000571 GO:0046872
Lal7g1429 466 ProSiteProfiles Zinc finger C3H1-type profile. 332 360 IPR000571 GO:0046872
Lal7g1429 466 ProSiteProfiles Zinc finger C3H1-type profile. 32 60 IPR000571 GO:0046872
Lal7g1429 466 SUPERFAMILY CCCH zinc finger 77 104 IPR036855 GO:0046872
Lal7g1429 466 SUPERFAMILY CCCH zinc finger 124 149 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1429 Lal-Chr7 19224568 19228641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1429 1 434 C2H2 Transcription Factor Family AT5G18550 52.165 4.26e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal7g1429 zf-CCCH 4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1429 - - gmx:100789405 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1429 7 19224568 19228641 Lal7g1429 7 19224568 19228641 ECH
Lal14g1947 14 18650193 18654488 Lal7g1429 7 19224568 19228641 LSH
Lal7g1429 7 19224568 19228641 Lal19g1503 19 17401376 17406689 LSH
Lal7g1429 7 19224568 19228641 Lal5g1388 5 16542064 16551452 PCT
Lal7g1429 7 19224568 19228641 Lal3g0346 3 2269292 2279740 PCT
Lal7g1429 7 19224568 19228641 Lal11g0493 11 3851814 3862454 PCT
Lal5g1388 5 16542064 16551452 Lal7g1429 7 19224568 19228641 PCT
Lal3g0346 3 2269292 2279740 Lal7g1429 7 19224568 19228641 PCT
Lal11g0493 11 3851814 3862454 Lal7g1429 7 19224568 19228641 PCT