Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1407 ATGACTCTTTTACTTCAAAATCAGAATCAGAATCAGAATCAAACTGGTCCTGCCACAGCTTCTTCTCACTCTCTTCATTCTCATTTCCTTTCTGCATCTGCTCCTTTTCCAGGTTCAAGATCCATGGTGAGTTTTGAAGATGTTCAAGGAGGGAAAGGTTGTAACAGATCCTTCTTCACCGCTTTTGATCCTGATGAAAATGTTGAGGAAGTGTACTTTCATCAACCTGAAAAGAAGCGGCGTCTCTCTGCGGATCAAGTTCAGTTTCTTGAGAAAAGCTTCGATGAGGAGAACAAGCTCGAACCTGAGAGGAAAACTAAGCTAGCCAAGGACCTTGATTTGGAGCCACGCCAAGTTGCTATTTGGTTTCAGAACCGCCGTGCAAGGTGGAAAACTAAACAACTTGAGAAGGATTATGAATCATTGCAGGCCAGCTTTCACACTCTTAAGACCAACTATGATATCCTCCTCAAGGACAAAGAAAAGTTAAAATCTGAGGTGGCAAACCTTACAGAAAAGGTAGTTGTAAGAGAGCAAGAAAGAGAGGAAGAGATTAAAAGAAAAGGATTGGAGGAACCAGTCCAAAAGCCTTTGATTGAATCAGTTTCTGAAGGTGAAGGGTCAAAAGTGTGTGTTGGGGGTTGTAAACAGGAAGAGATTAGTTCAGGCAAGAGTAGTGACATATTGGATTCTGAAAGCCCTACTCATAATTATGTAGATGGTGTTCACTCTGCAATGCTGGAGCTGAGTGATTCTTCTTATGTATTTGAAGCTGATCTATCACAAGATGAAGAAGACAACTTGAGCAAGAGCCTCTTCCCTCATCAACCATATATCTTTCCAAAGTTTGAAGATGTTAATTACTCTGACCACCCTGGAAGTTCTTCTGACTTTGGATTTACGGAGGAAGATAATACCCTTTGGTCCTCTTGGTCTTACTAA 942 0.413 MTLLLQNQNQNQNQTGPATASSHSLHSHFLSASAPFPGSRSMVSFEDVQGGKGCNRSFFTAFDPDENVEEVYFHQPEKKRRLSADQVQFLEKSFDEENKLEPERKTKLAKDLDLEPRQVAIWFQNRRARWKTKQLEKDYESLQASFHTLKTNYDILLKDKEKLKSEVANLTEKVVVREQEREEEIKRKGLEEPVQKPLIESVSEGEGSKVCVGGCKQEEISSGKSSDILDSESPTHNYVDGVHSAMLELSDSSYVFEADLSQDEEDNLSKSLFPHQPYIFPKFEDVNYSDHPGSSSDFGFTEEDNTLWSSWSY 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1407 313 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 14 309 IPR045224 GO:0003700
Lal7g1407 313 Coils Coil 153 180 - -
Lal7g1407 313 SMART HOX_1 76 137 IPR001356 GO:0003677
Lal7g1407 313 MobiDBLite consensus disorder prediction 1 25 - -
Lal7g1407 313 Pfam Homeobox associated leucine zipper 133 174 IPR003106 GO:0006355|GO:0043565
Lal7g1407 313 Gene3D - 72 143 - -
Lal7g1407 313 MobiDBLite consensus disorder prediction 293 313 - -
Lal7g1407 313 Pfam Homeodomain 78 131 IPR001356 GO:0003677
Lal7g1407 313 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 14 309 - -
Lal7g1407 313 CDD homeodomain 78 134 IPR001356 GO:0003677
Lal7g1407 313 SUPERFAMILY Homeodomain-like 64 135 IPR009057 -
Lal7g1407 313 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Lal7g1407 313 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Lal7g1407 313 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1407 Lal-Chr7 19036808 19038862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1407 20 259 Homeobox Transcription Factor Family AT3G01470 39.837 1.66e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal7g1407 Homeodomain 6.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1407 - - gmx:732618 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1407 7 19036808 19038862 Lal7g1407 7 19036808 19038862 ECH