Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1400 ATGTCTAGCAGAAGATCCAGGTCAAGACAATCGAGTGGTTCAAGTAATATGATCACGGAGGATCAGATCAATGACCTTGTCTCCAAGTTACAACAACTTCTTCCTGAGATTCGCCATAGCCATAGCCATTCTGATAAGGTATCATCTGCGAAGATATTGCAAGAGACATGCAACTATATTAGAAGCTTACACAGAGAGGTGGACGATCTAAATTCTACAAAAGTTCCATGTAGATGCTCCCAACTGTTAGCTCATTCACGTCCATCAGTGCATGGATATAGCGGTGGAGGTAAACCTGAGGTTCTCCCTACTCCAAGATCTGAAGGCGACATACTTTCGTCCCCGCATTTAAAAGCCTTCAGATTGAATGAACTTAAGAATGCTACTAGAAATTTTCTTTCTGATAGTCTAATCGGACAAGGGGGATTTGGTAATGTCTATAAGGGATGGATTGATGGTCTAACCCTTGGGGCTGCAAGGCCTGGTGGATCTGAAATGGTTGTTGCGGTGAAGAAGCTTAAAGCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTATCTGAACTCAATTATCTTGGACAACTTCATCATCCAAATCTTGTCAAACTTATTGGATACTGCCTGGAAGGGGATAACCGGCTTCTCGTGTATGAGTATATGCCCAATGGAAGCTTGGAAAATCATCTATTTCACAAGGGCGCAAAACCACTTCCTTGGGCAACAAGAATCAAAGTTGCTATTGGTGCTGCCCGAGGTCTCACCTTCCTGCATGACTCTAAGCAACAAGTTATATACCGTGATTTCAAGGCTTCCAATATTTTATTAGATTCGGAATTTAATGCGAAACTCTCAGATTTCGGTTTAGCCAAAGCAGGCCCCACTGGTGAAAATAGTCATGTTTCCACTCAAGTACTGGGTACTCAAGGTTATGCTGCTCCTGAATATATTGCTACAGGCTGGCTGACTGCGAAATGTGATGTGTATAGCTTTGGAGTTGTGCTATTGGAACTATTATCAGGACGCAACGCTGTTGATAAAACAAAATCTGGAGTGGAACATAATCTGGTAGATTGGGCAAGACCCTATTTGAATGATAGAAGGAAGTTGTTCAGGATCATGGACACAAAGTTAGAAGGACAGTATCCACAAAGGGGAGCTTATGCAGTTGCCATTCTTGCATTTCAGTGTATTAGTGAGGCCAAGATTAGGCCACAGATGTCTGAGATTTTAGCTATCTTGGAACAGTTGCCAGCCACCAGACATTCATCCAGGTCCAGCCCGGCCAGAACCGACGAGATACCCAACTCAAGCCCAATGAGAGAGGGCCTATAG 1329 0.4357 MSSRRSRSRQSSGSSNMITEDQINDLVSKLQQLLPEIRHSHSHSDKVSSAKILQETCNYIRSLHREVDDLNSTKVPCRCSQLLAHSRPSVHGYSGGGKPEVLPTPRSEGDILSSPHLKAFRLNELKNATRNFLSDSLIGQGGFGNVYKGWIDGLTLGAARPGGSEMVVAVKKLKAEGFQGHKEWLSELNYLGQLHHPNLVKLIGYCLEGDNRLLVYEYMPNGSLENHLFHKGAKPLPWATRIKVAIGAARGLTFLHDSKQQVIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGENSHVSTQVLGTQGYAAPEYIATGWLTAKCDVYSFGVVLLELLSGRNAVDKTKSGVEHNLVDWARPYLNDRRKLFRIMDTKLEGQYPQRGAYAVAILAFQCISEAKIRPQMSEILAILEQLPATRHSSRSSPARTDEIPNSSPMREGL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1400 442 Pfam Protein tyrosine and serine/threonine kinase 137 352 IPR001245 GO:0004672|GO:0006468
Lal7g1400 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Lal7g1400 442 Gene3D - 7 86 IPR036638 GO:0046983
Lal7g1400 442 ProSitePatterns Protein kinases ATP-binding region signature. 138 171 IPR017441 GO:0005524
Lal7g1400 442 ProSiteProfiles Protein kinase domain profile. 132 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal7g1400 442 MobiDBLite consensus disorder prediction 1 20 - -
Lal7g1400 442 MobiDBLite consensus disorder prediction 420 442 - -
Lal7g1400 442 Pfam Helix-loop-helix DNA-binding domain 21 63 IPR011598 GO:0046983
Lal7g1400 442 SUPERFAMILY Protein kinase-like (PK-like) 110 413 IPR011009 -
Lal7g1400 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 89 IPR036638 GO:0046983
Lal7g1400 442 PANTHER OS01G0588500 PROTEIN-RELATED 74 431 - -
Lal7g1400 442 CDD STKc_IRAK 138 415 - -
Lal7g1400 442 Gene3D Transferase(Phosphotransferase) domain 1 219 433 - -
Lal7g1400 442 SMART finulus 16 69 IPR011598 GO:0046983
Lal7g1400 442 PANTHER BNAC02G17010D PROTEIN 74 431 - -
Lal7g1400 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 63 IPR011598 GO:0046983
Lal7g1400 442 CDD bHLH_AtPRE_like 16 70 - -
Lal7g1400 442 Gene3D Phosphorylase Kinase; domain 1 104 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1400 Lal-Chr7 18970247 18976801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1400 118 430 Glycoside Hydrolase AT3G07070 50.789 7.74e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal7g1400 PK_Tyr_Ser-Thr 1.5e-45 CL0016
TF bHLH Lal7g1400 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1400 - - pvu:PHAVU_003G191400g 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal13g1830 13 17757446 17763312 Lal7g1400 7 18970247 18976801 ECH
Lal7g1400 7 18970247 18976801 Lal7g1400 7 18970247 18976801 ECH