Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1394 ATGGGGAGACCCCCTTGTTGTGAAAAGATTGGGATCAAGAAAGGACCTTGGACTCCAGAAGAGGACATCATCTTGGTCTCTTACATTCAAGAACATGGTCCTGGGAATTGGAGATCTGTTCCAACCAATACAGGTTTGATGAGATGTAGTAAAAGCTGCAGACTTAGATGGACTAATTATCTTCGACCAGGTATCAAACGAGGTAACTTCACCGACCATGAGGAGAAGATGATAATCCACCTCCAAGCTCTTTTGGGAAACAGATGGGCTGCTATAGCTTCATATCTTCCACAAAGGACAGACAATGACATAAAAAACTACTGGAACACCCATTTGAAGAGGAAGCACAACAAGCTTCAAAATGGAGGGAATGATGACCAAGAAGGACATTCTTCTGCTTCCTCTCAATCACAACCAAAGGGTCAATGGGAGAGAAGCCTACAAACTGATATAAAAATGGCCAAACAAGCTTTATTTGAAGCTTTGTCCCTTCACAAACCGATAACCAATACTACTTTCCCTGAAACCAAACCCTCAATTTCTCATATTAACACTACCACTATTACTTCAACCTACCCCACTAAACAACCAAACAATGCATCTTCCTATGCATCAAGCTATGAAAACATATCTAAATTACTAGAAAACTGGATGATGAAATTCCCAAACACACCAAATTCCTTAAGAAACAACATGGTCCCTACAGGATCAAGTTCAAGTAAATTAGCAAATAGCACCACTGGTCAATGTTCACCAGATCTTGCTTTTGACTCCTTGTTGAGCTTCAACTCCTCCTCACAATCTGTTGTTGAAGATAGCGATAGCAACATGAAAATAAATAAGGCTGGTTTGTTCCAAGATCAAAGGAAGACAAACATGGAGAATCATCATGTGCCTCTTACTTTGCTAGAGAATTGGCTTTTTGATGATGGAGCTGTTCAATGCAACGAAGATCTAATGAACATATCACTGGAGGAAAGTACCGCAGGTTTGTTCTAG 999 0.4034 MGRPPCCEKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKRKHNKLQNGGNDDQEGHSSASSQSQPKGQWERSLQTDIKMAKQALFEALSLHKPITNTTFPETKPSISHINTTTITSTYPTKQPNNASSYASSYENISKLLENWMMKFPNTPNSLRNNMVPTGSSSSKLANSTTGQCSPDLAFDSLLSFNSSSQSVVEDSDSNMKINKAGLFQDQRKTNMENHHVPLTLLENWLFDDGAVQCNEDLMNISLEESTAGLF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1394 332 Gene3D - 68 157 - -
Lal7g1394 332 Gene3D - 13 66 - -
Lal7g1394 332 CDD SANT 69 112 IPR001005 -
Lal7g1394 332 CDD SANT 16 61 IPR001005 -
Lal7g1394 332 MobiDBLite consensus disorder prediction 124 145 - -
Lal7g1394 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lal7g1394 332 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 317 - -
Lal7g1394 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lal7g1394 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 317 - -
Lal7g1394 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lal7g1394 332 MobiDBLite consensus disorder prediction 116 146 - -
Lal7g1394 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lal7g1394 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lal7g1394 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lal7g1394 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lal7g1394 332 SMART sant 13 63 IPR001005 -
Lal7g1394 332 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1394 Lal-Chr7 18924460 18926225 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1394 1 310 MYB Transcription Factor Family AT5G62470 52.023 4.29e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal7g1394 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1394 K09422 - gmx:100807020 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1394 7 18924460 18926225 Lal7g1394 7 18924460 18926225 ECH
Lal14g1909 14 18426580 18428295 Lal7g1394 7 18924460 18926225 LSH
Lal7g1394 7 18924460 18926225 Lal19g1477 19 17249301 17250804 LSH