Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1393 ATGAAGAAGATGAAGGTGGTGGTAAAGAGAGAAGTTGCTAATAACACATCACCTTCAGGGGTGAGAAATGATGTTAGATACGGGGAGTGCCAGAAGAATCATGCAGCAAACAGTGGAGGTTATGCAGTGGATGGGTGCATGGAGTTCATGGCTAGCGCTGGAGAGGGAACAAGTGGAGCCCTTACATGTGCTGCTTGTGGTTGCCATAGGAACTTTCATAAAAGGGAACTGAACAGTGCAACATGA 246 0.4675 MKKMKVVVKREVANNTSPSGVRNDVRYGECQKNHAANSGGYAVDGCMEFMASAGEGTSGALTCAACGCHRNFHKRELNSAT 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1393 81 Pfam ZF-HD protein dimerisation region 25 77 IPR006456 -
Lal7g1393 81 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 27 76 IPR006456 -
Lal7g1393 81 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 26 76 IPR006456 -
Lal7g1393 81 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 78 - -
Lal7g1393 81 PANTHER BNAA09G44460D PROTEIN 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1393 Lal-Chr7 18918268 18918513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1393 1 79 Zinc finger-homeobox gene family AT1G18835 64.557 7.26e-28 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal7g1393 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1393 - - ccaj:109806860 120.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1908 14 18419251 18419496 Lal7g1393 7 18918268 18918513 LSH