Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1385 ATGAGAGACCCTTCAATTATGCTATTTGGCCATGATATTTCCTTCCCCGTTACACAACAGCAACAACTTCTTCATCATCACCATATTCATATTCCTATCCTTTCTCAACATGACAAACACTACTCTCACATGGATCGAGAAGCTGAAAATGCTACAAAGAAGCAAGAGGCTGATCCTCCTTCTAATACAAAAGATAGCAAGAGTTCAGGCGCATCACCTGAAGCTATTGTGAACCCAAAAACTCCTTCTATAGATGAAGAGGATGCTGAGAATTCAAAAAATGACAACTCAGAGAAGGAACAAAGCGATGCAGGCAACTCACAAGAGAAAACCCTGAAGAAGCCAGATAAATTGGTCCCATGTCCCCGCTGCAATAGCATGGACACCAAATTCTGTTACTACAACAACTACAATGTTAACCAGCCACGTTATTTCTGCAAAGCATGTCAGAGATACTGGACTGCAGGTGGCACCATGAGGAATGTACCAGTGGGGGCAGGACGACGAAAGAACAAGAACTCGACCTCGCATTATCCTCATATCATAATCTCTGAGGCTCTTCAAGCTGCTAGGATTGATTCTCCTGATGGAAATCATCATCCCATGTTGAAAAGCAATGGTAGAGTCCTCAGCTTTGGATTAGATCATGCACCAATTTGTGATTCCATGGCATCTGTCCTGAATCTCGGAGACAAAAAGGTTCTTAATTGCGCAACAAGAAATGAGTTTCACAGCTTTGAGGATGGAAGATTTCCTGTTCCTTGCAAAAGTGGGGAAAATAGTAGTGATAGCATTGGGTGCTCAAATACATCTACCATTACGGTTTCATGTTCCAATGGAAAAAGTACCAAAAGTACCTTCCATGAACCGGCACTAGGGAATAATAACAGTTTCATTCCTCAAGTTCCTTGGCCTTATCCTTGGAATTTTCCGGTTCCGTCACCTGCCTTTTGTCCTTCAGGATATCCCTTATCATTCTATCCTGCTGCCTTTTGGAACTGCCCCTGCCCCTGCCCCATGCCAGGGTCTAGTCCAAATTCTCCAACATTGGGGAAGCACTCAAGGGATGGTGACATTATTAACCAAGAGAATTTGCACAAAGAAGAACCGTCAAAGCAGAGAAACGGATGTGTTTTAGTTCCCAAAACGCTAAGAATTGATGACCCTAGTGAAGCTGCAAAGAGTTCAATATGGGCAACACTAGGAATTAAAAATGAATCATTGAGTGGGGGAGGTATGTTTAAGGCTTTTCAGTCAACCAAGAAGGACGAAAAGAAACATATGCAAGCCTCACCAGTGTTGCGGGCTAACCCCGCAGCGTTCTCTAGATCCCTTGATTTTCATGAGAACTCCTGA 1356 0.4329 MRDPSIMLFGHDISFPVTQQQQLLHHHHIHIPILSQHDKHYSHMDREAENATKKQEADPPSNTKDSKSSGASPEAIVNPKTPSIDEEDAENSKNDNSEKEQSDAGNSQEKTLKKPDKLVPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYPHIIISEALQAARIDSPDGNHHPMLKSNGRVLSFGLDHAPICDSMASVLNLGDKKVLNCATRNEFHSFEDGRFPVPCKSGENSSDSIGCSNTSTITVSCSNGKSTKSTFHEPALGNNNSFIPQVPWPYPWNFPVPSPAFCPSGYPLSFYPAAFWNCPCPCPMPGSSPNSPTLGKHSRDGDIINQENLHKEEPSKQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESLSGGGMFKAFQSTKKDEKKHMQASPVLRANPAAFSRSLDFHENS 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1385 451 Pfam Dof domain, zinc finger 117 173 IPR003851 GO:0003677|GO:0006355
Lal7g1385 451 PANTHER CYCLIC DOF FACTOR 2 2 450 IPR045174 GO:0003700|GO:0006355
Lal7g1385 451 ProSiteProfiles Zinc finger Dof-type profile. 119 173 IPR003851 GO:0003677|GO:0006355
Lal7g1385 451 MobiDBLite consensus disorder prediction 81 117 - -
Lal7g1385 451 MobiDBLite consensus disorder prediction 38 119 - -
Lal7g1385 451 MobiDBLite consensus disorder prediction 38 61 - -
Lal7g1385 451 PANTHER CYCLIC DOF FACTOR 1 2 450 - -
Lal7g1385 451 MobiDBLite consensus disorder prediction 62 76 - -
Lal7g1385 451 ProSitePatterns Zinc finger Dof-type signature. 121 157 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1385 Lal-Chr7 18889309 18891934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1385 2 449 C2C2-Dof Transcription Factor Family AT3G47500 44.586 7.35e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal7g1385 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1385 - - gmx:778113 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g1437 12 17569325 17573124 Lal7g1385 7 18889309 18891934 ECH
Lal13g1809 13 17584731 17588165 Lal7g1385 7 18889309 18891934 ECH
Lal24g1371 24 15003274 15007675 Lal7g1385 7 18889309 18891934 ECH
Lal22g0743 22 5329464 5335579 Lal7g1385 7 18889309 18891934 ECH
Lal7g1385 7 18889309 18891934 Lal7g1385 7 18889309 18891934 ECH