Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1383 ATGGGAAGAGTTAAACTAAAGATAAAGAAATTAGAGAGCACAAGCAACCGTCAAGTAACTTATTCCAAACGTAAAAGTGGAATTTTAAAGAAAGCTAAGGAATTATCAATACTATGTGATATACCTATTGCCCTTCTCATGTTTTCACCAACTGGAAAACCTACATTACTACAAGGAGAACGCAGCAATCTTGAGGAGGTCATTACAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGCCTTGAAGTTCTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTTTTGGGTTCAAGCAGTCAAACAGTGGAGGAACTAACTCATCAAGTGAGGATTCTACAAACTCAGCTTGCAGAAGTACATCAAAGACTGAGCTATTGGAGTAATCTTGACAAGATCAATAACTTGGAACATCTTAGGCAAATGGAAGACTCGTTAAGGGAATCCATCAATCGAGTGTGTTTACAGAAGGATAATTTAGGAAAGCACCAACTAATTCCACTTAATTGTGCTAACCAGGAAGGGATGAATTTACCCATGATGATGGCTGGTCTGCAAGAGTCCCAACCCCTGTCTTGGCTTTTGAATAATGATAACCATCACCAGTTGATGTTACCCAATGAACCAAAATTTCTAGCATTTAGTGATAATACCAATAGAGATGCTGAGTGCTCCACTGACATTTCACTCCCAGGCTATTCTGGTTATAATATTGGCAATAGCAAACTTGAGGTTGGAAGCTCTCCCCAGGTCACTACTTTGGGTCATGGAGGTTGTGCCTTGAATGAGTTAAATGGAACTGCTTCCTTAAACGTACAACATTGTGACCAGTTTGCATACCCTCCTCATCCACCAGATAATGAGGAAATGAAACATCACCATGCAATAAACAGTAAACCAAATACTATGGATTACCAAGTTCATAATAACTTTGATCTTCCTAGATCACTGTTTGATAATGGACCTCAGTGCTGGAATTCTGGCTCTGGGCCTCCTTGTGGGGTTGCTATGTATAATGAGAATGGCTTCCATAGGGTAAGCAGTCCTTTCCTGTTTGATTAG 1095 0.3936 MGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIPIALLMFSPTGKPTLLQGERSNLEEVITKFAQLSPQERAKRKLESLEVLKKTFKKLDHDVKIQDFLGSSSQTVEELTHQVRILQTQLAEVHQRLSYWSNLDKINNLEHLRQMEDSLRESINRVCLQKDNLGKHQLIPLNCANQEGMNLPMMMAGLQESQPLSWLLNNDNHHQLMLPNEPKFLAFSDNTNRDAECSTDISLPGYSGYNIGNSKLEVGSSPQVTTLGHGGCALNELNGTASLNVQHCDQFAYPPHPPDNEEMKHHHAINSKPNTMDYQVHNNFDLPRSLFDNGPQCWNSGSGPPCGVAMYNENGFHRVSSPFLFD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1383 364 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Lal7g1383 364 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 357 - -
Lal7g1383 364 Coils Coil 114 134 - -
Lal7g1383 364 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 55 IPR002100 GO:0003677|GO:0046983
Lal7g1383 364 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal7g1383 364 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 1 357 - -
Lal7g1383 364 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal7g1383 364 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal7g1383 364 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal7g1383 364 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Lal7g1383 364 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1383 Lal-Chr7 18881466 18884703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1383 1 276 Type I MADS-box Gene Family AT2G03060 48.443 9.34e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lal7g1383 SRF-TF 5.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1383 - - lang:109362237 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1383 7 18881466 18884703 Lal7g1383 7 18881466 18884703 ECH
Lal14g1903 14 18399410 18402351 Lal7g1383 7 18881466 18884703 LSH