Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1380 ATGGAAAACATTTCACCTATGTATCATAAGAAAGAGGATCAGATGGATTTGCCTCCTGGGTTTCGGTTTCACCCAACTGATGAAGAGCTTATAACCCAATATCTTCACAAGAAGGTTACTGATTCCAAATTCACTGCAAGGGCCATTGGAGAAGTGGACTTGAACAGGTGTGAGCCATGGGATTTGCCATGGAAAGCCAAGATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGGGATAGAAAATACCCAACTGGGTTGAGGACCAACAGAGCCACTGAAGCAGGGTACTGGAAGGCCACAGGGAAAGACAAGGAAATTTTCAAAGGAAAATCATTGGTTGGGATGAAGAAAACTCTAGTTTTCTATAAAGGAAGAGCACCAAAAGGAGAGAAAAGTAACTGGGTCATGCATGAATACAGGCTTGAAGGAAAATTCACTGTTAACTATCTCCCCAAAACTGCAAAGAATGAGTGGGTTATTTGTAGGGTTTTCCAGAAGAGTTCATCTGGGAAGAAAATTCATATTTCTGGGATAATGAGGTTGGACTCTTATGGAAATAAATTGGGTTCTTGTGTTATACCACCCAAAACAATGAATGATTCTGCTTACGTGCCCTGCTTCTCCAATTCTATTGATAATGTTCAAAGAAACAACATCAACAACAACCAAGGAGGGATTTATGATCCTTTCACCTTCCCCGTTTATTCGGGTTTATCAAATCCATTACAAATCCCTCTTCCAAGAGTGCCACCACCATCCACAATCACTGCCTCATTCTACACCTCTACTCAAGCTCCAACAAATTTACCATTACCCGGTTCTGTTTACAACATGCAGGACCAAACCAACTTTTATGACAACAACAATGGATCAAACAACATGATCAATGGTTTCAAGACAGATAGGGAAATGATGGGTGTCTCAAACAACAATGGATCAAACATGATGAATGGTTGTTTCAAGACAGATAGGGAAATCTCACAGGAAAAATGTCCCACTACTGATATGAATGCTGCAACCTCTTCTGTAGTCTCAAATTTTGATATGTGTAGGAGGCCCTTTCACAATCAGACTCAGCACCACCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTTCTGCTGCACCAATGGACCTTGATGGCTTATGGAATTACTAA 1158 0.4154 MENISPMYHKKEDQMDLPPGFRFHPTDEELITQYLHKKVTDSKFTARAIGEVDLNRCEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFTVNYLPKTAKNEWVICRVFQKSSSGKKIHISGIMRLDSYGNKLGSCVIPPKTMNDSAYVPCFSNSIDNVQRNNINNNQGGIYDPFTFPVYSGLSNPLQIPLPRVPPPSTITASFYTSTQAPTNLPLPGSVYNMQDQTNFYDNNNGSNNMINGFKTDREMMGVSNNNGSNMMNGCFKTDREISQEKCPTTDMNAATSSVVSNFDMCRRPFHNQTQHHPPPPPPPPPASAAPMDLDGLWNY 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1380 385 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Lal7g1380 385 SUPERFAMILY NAC domain 7 167 IPR036093 GO:0003677|GO:0006355
Lal7g1380 385 MobiDBLite consensus disorder prediction 359 375 - -
Lal7g1380 385 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Lal7g1380 385 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Lal7g1380 385 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 340 - -
Lal7g1380 385 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 340 - -
Lal7g1380 385 MobiDBLite consensus disorder prediction 354 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1380 Lal-Chr7 18866526 18868370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1380 15 385 NAC Transcription Factor Family AT5G07680 50.132 1.80e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal7g1380 NAM 9.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1380 - - lja:Lj0g3v0155359.1 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1470 19 17207718 17209527 Lal7g1380 7 18866526 18868370 ECH
Lal7g1380 7 18866526 18868370 Lal7g1380 7 18866526 18868370 ECH
Lal7g1380 7 18866526 18868370 Lal19g1470 19 17207718 17209527 LSH