Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1363 ATGGAAGAAGATCAACAACACCGGTGCAAGTTTTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTAGAGGGTTTGTCATCATCATCTGAAACAGAAGACAAAGAAAAAGTTGGTGGTTCTGAATCTGATACTGTAACTGGAACCATCAAAAGTGGCTATGGTTTAAGGGAGAATCCAAATAAGACTTGGAGGATTTCAGATTCAACAAGTGAAAACACTTTGATTACTCTCACTACTGAAAGGTTCTGTAAAGAGTGTGGCAAAGGGTTTCTCTCTTGGAAAGCCTTGTTTGGTCACATGAAATGTCACTCTGACAAAGAAAAGGTTTCCAACAAATTGGTGGAAGATCAAGATTCTGTGACTAACAACAATGCTAGCAGCAGCCACAATCAGAAGCTGGTCTTGGATAGCCAAACTTATAATGAAGCAACTGCTCCAAGTATGACAAGAAGAAGAAGATCAAAGAGAAGAAGAGCGAGTTACATGGCTGCTGCTAATACTATTCCTTCTACTTTTTCACTATCTGAGGTTGAGCAAGAGCAAGAAGAAGTTGCTATGAGCTTGATCATGCTTAGTAGGGATTTAAGTTCAGAATCTTCAGCTACTGAGTTCATCAAGAGTGAGAAAGGTAAGAAGTTTGAGCTAGATTATGTGTCTGCATTGGAGAACTCTGAAGGTAACAGAGTCAATGGAACAGAATCAAATTTATCAAAGTCTACTATCACTAATATTTGCGCAGACAAGCCTTCAGAAGCAGCTAAATTCAGCAAGAGCACTCATAAAAGAGGCAAGTTTGAATGTACAACTTGCAACAAAATATTCCATTCTTACCAAGCACTCGGAGGTCATAGAGCTAGTCACAAGAGGAACAAAAACTGCTTTGTTTCAAAGAATGAGAACAATGAAAACAACATTGATCCAACAACTGGAAGCATGTTCATGAAGAACAGTAACATTGAGTATCTGGTTGAAGCTGAAATGGATGCTGGTTTTGATAATGAAGTGGCAGATACAATTACTGAGTCTAAGAAAAGCAAAGTTCATGAGTGTCCAATTTGCTTTAAGATTTTTCAATCAGGACAAGCCTTAGGTGGTCACAAGAGATCTCATTTGGCTAGTGGTTCTGAGAGTACTAGAAACTTCCAAAAAGGGTTACTTGAGGAACCAGTTCAAGAAATTAGAGAATTCCTTGATCTCAATCTTCCTGCTGCTACAGAAGAGGAAAGTACTAGCTATGCTGATTCTAACAGACCCTGGTGGTTAGTAGAAAACAATCACAACCAGGAGGCACTAATAAGCCTCATGTCTAGCTAA 1314 0.3927 MEEDQQHRCKFCSKSFPCGRSLEGLSSSSETEDKEKVGGSESDTVTGTIKSGYGLRENPNKTWRISDSTSENTLITLTTERFCKECGKGFLSWKALFGHMKCHSDKEKVSNKLVEDQDSVTNNNASSSHNQKLVLDSQTYNEATAPSMTRRRRSKRRRASYMAAANTIPSTFSLSEVEQEQEEVAMSLIMLSRDLSSESSATEFIKSEKGKKFELDYVSALENSEGNRVNGTESNLSKSTITNICADKPSEAAKFSKSTHKRGKFECTTCNKIFHSYQALGGHRASHKRNKNCFVSKNENNENNIDPTTGSMFMKNSNIEYLVEAEMDAGFDNEVADTITESKKSKVHECPICFKIFQSGQALGGHKRSHLASGSESTRNFQKGLLEEPVQEIREFLDLNLPAATEEESTSYADSNRPWWLVENNHNQEALISLMSS 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1363 437 Pfam C2H2-type zinc finger 83 105 - -
Lal7g1363 437 Pfam C2H2-type zinc finger 347 372 - -
Lal7g1363 437 Pfam C2H2-type zinc finger 265 289 - -
Lal7g1363 437 SUPERFAMILY beta-beta-alpha zinc fingers 82 287 IPR036236 -
Lal7g1363 437 Gene3D Classic Zinc Finger 262 370 - -
Lal7g1363 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 348 375 IPR013087 -
Lal7g1363 437 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 206 436 - -
Lal7g1363 437 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 204 - -
Lal7g1363 437 SMART c2h2final6 348 370 IPR013087 -
Lal7g1363 437 SMART c2h2final6 265 287 IPR013087 -
Lal7g1363 437 SMART c2h2final6 81 103 IPR013087 -
Lal7g1363 437 ProSitePatterns Zinc finger C2H2 type domain signature. 350 370 IPR013087 -
Lal7g1363 437 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Lal7g1363 437 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 206 436 - -
Lal7g1363 437 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 204 - -
Lal7g1363 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Lal7g1363 437 MobiDBLite consensus disorder prediction 16 53 - -
Lal7g1363 437 ProSiteProfiles Zinc finger C2H2 type domain profile. 265 292 IPR013087 -
Lal7g1363 437 ProSitePatterns Zinc finger C2H2 type domain signature. 267 287 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1363 Lal-Chr7 18760966 18762279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1363 247 413 C2H2 Transcription Factor Family AT2G45120 44.118 2.81e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal7g1363 zf-C2H2_6 4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1363 - - lang:109344462 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal14g1891 14 18340351 18341934 Lal7g1363 7 18760966 18762279 LSH
Lal7g1363 7 18760966 18762279 Lal19g1461 19 17167393 17168982 LSH