Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1354 ATGGCTTTCTTTGGTAAACTTGGGAATATACTTAGACATGCATCTGCAGCAAACAAAAAAATCAGTTCCGAGATGCGTTCATCCCCATCATTTTTCCAGGCTATTCGGTGCATGACATCTGCTCCTAGCTCAAAGCTTTTTGTAGGAGGCATTTCATTTAATACCGACGAGCAAAGTTTTAGGGAAGCCTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATCGTGAAAGTGGTAGATCCAGAGGATTCGGCTTCATCACTTACAGTTCAGTTGAGGAAGCATCAAGTGCCATCCAGGCTTTGGATGGACAGGATCTTCATGGTCGCCAAGTCAGGGTAAATTATGCAAATGATAGGACTCGTGGCTTTGGTGGTGGCGGTGGCGGTTTTGGTGGTTCTTATGGCAACGCACCATATGGTGGTGGAGCTGGCTACGGAGGTGGTTATGGTAATTCAGGTGGTGGCGGCTATGGTGGTGGCGGTGGCTATGGTGGTGCTGGTGGATATGGTGGCAATCCTGCTGGAGGTTATGGTGGTGGTGGATATGGTGGAAGTAGCTATGGATCTGGTGGCAATTATGGCAGCAGCAGCTCTGGCAATAACTATTCTGCTCCTGACAGTTTTGGAGCTCCTGGTGCTGCTCCTGACAGTTTTGGAGCTCCTGGTGCTGCTCCTGACAGTTATGGAGCTCCTGGTGTTGCTCCAGACAGTTTTGGAACTCCAAGTGCTGCTCCTGACAGTTTTGGAACTCCAAGTGCTGGTGGTGGTTACAGTGGGGTTGGAGGCTATGGTGATAACAGTGGGAGTTTTGGTGTTGCTGGTGGTGTTGGAGGAAATGAAAGCTCTCCTGGTTTCGGGGGCAGCAATGGTTATGCCAGTGGTAGCAACTTTGCTGGTGGATTTGACGGCAGCGCTGGCCAGTTTGATAGCAAAGAAAGCAGCAATGTGGGTGAGGATTTGGGAGGTTTTGGAAACTCAACTGGAGGAAATTACAGGGATGATGCGGATGATTTTGCCAAAAGGGCTTGA 1041 0.487 MAFFGKLGNILRHASAANKKISSEMRSSPSFFQAIRCMTSAPSSKLFVGGISFNTDEQSFREAFSKYGEVVDARIIMDRESGRSRGFGFITYSSVEEASSAIQALDGQDLHGRQVRVNYANDRTRGFGGGGGGFGGSYGNAPYGGGAGYGGGYGNSGGGGYGGGGGYGGAGGYGGNPAGGYGGGGYGGSSYGSGGNYGSSSSGNNYSAPDSFGAPGAAPDSFGAPGAAPDSYGAPGVAPDSFGTPSAAPDSFGTPSAGGGYSGVGGYGDNSGSFGVAGGVGGNESSPGFGGSNGYASGSNFAGGFDGSAGQFDSKESSNVGEDLGGFGNSTGGNYRDDADDFAKRA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1354 346 CDD RRM_HP0827_like 45 121 - -
Lal7g1354 346 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Lal7g1354 346 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 165 - -
Lal7g1354 346 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 165 - -
Lal7g1354 346 MobiDBLite consensus disorder prediction 306 346 - -
Lal7g1354 346 MobiDBLite consensus disorder prediction 217 293 - -
Lal7g1354 346 SMART rrm1_1 45 118 IPR000504 GO:0003723
Lal7g1354 346 SUPERFAMILY RNA-binding domain, RBD 41 154 IPR035979 GO:0003676
Lal7g1354 346 SMART rrm2_1 45 118 IPR003954 GO:0003676
Lal7g1354 346 Gene3D - 12 139 IPR012677 -
Lal7g1354 346 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1354 Lal-Chr7 18698063 18701015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1354 44 142 Eukaryotic Initiation Factors Gene Family AT3G16380 34.314 1.15e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1354 K12741 - gmx:100799124 203.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1354 7 18698063 18701015 Lal7g1354 7 18698063 18701015 ECH