Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1352 ATGGCCAAATCAGTGATCCCAAATGCTATTTCTCTTATCCTTGCTAACCCTTCCCCCGATTCTTCTTCACTTATCCCAGACATTGTTGTTCAAGTCCTCCATCTCAAACCCACTGGAAACAGATTCATGTTTAATGCTAATGATGGGAATTTGAAGATTAAGGCGATTCTTCCTTCCAATCTAAACTCTGAGGTACACTCTGGAAATATTCAGAATCTGGGTCTTATTCGCATCATTGATTATACTGTCAACGATTTTCCAAACAAACCTGAGAAATATCTTATTGTCACCAAATGTGAACCAGTTTCCTCTGCGCTTGAAGCGGAGATAAAGAGTGAGGTCAAAACTGCTGATTCTGCTTCTTCTGCCACTGCCACTATTTTGAAGCCAAAGCAGGAAATGGTGGCAAAATCTGCTGCTCAGATTGTCCATGAACAGCATCAAAATGTGACTCGTACTGAACGTAAGGCCATGTCAAGGAGGGTGAATCCTCTTGTATCATTGAATCCTTATCTGGGTAATTGGACAATTAAGGTTACTGTTACAAGCAAAGGGAATATGCGTACATATACGAATGCTAGAGGAGAAGGTTGTGTCTTCAATGTCGAGTTGACTGATGAAGATGGTACTCAGATTCAAGCAAAAATGTTTAATGAGGCTGCAAGGAAATTTTATGACAAGTTTGTTCTAGGAAAAGTTTACTACATTTCAAAGGGAACTTTAAAAGTTGCTAATAAACAGTTTAAAACTGTCCAAAATGATTATGAAATGACCCTGAATGATTATTCTGAGGTGGAAGAGGTTGCTGATGAAGCAGGTTTTGTTCCTGCAACAAAGTTCAGTTTTGTTCAGATTGATCAGTTGGGTTGTTATGTCAACAAGAATGACCTTGTTGATATTGTTGGAGTTGTTCAGAATGTGTCCTCAACAATGAGCATCAGAAGGAAGAGTAACAACGAGTCTGTTCCAAAGCGTGACATTACTATTGCTGATGATACAAAGAAGACTGTTGTTTTGTCATTGTGGAATGATCTTGCAACTAATCTAGGGCAAGAGTTGCTTGACATTGCTGATCAATCTCCAGTGGTTGCTATCAAATCCCTCAAGGTTGGAGATTTCAACGGTGTTTCGTTGTCAACTGTAAGCAGAAGCATAGTTCTGATAAATCCAGACATACCTGAAGTGAAGAAACTCAGATGCTGGTATGATTCTGAAGGCAAGGAAGCTGCAATGGCTTCTATAGGAAGTGGATCAAGTCCTGCAGCCACGTACGGAAACAAATCAGTGTACTCTGATCGTGAAATGCTTTCTCACATAACTTCAAACCCATCCTTGGGGGATGACAAGCCAGCATTTTTCAGCATTAGAGGATATATAAGCTTTATCAGGCCTGGTCAGGCAATGTGGTACCGTGCATGTAAAACTTGCAACAAGAAAGTTACTGAAAGCATTGGTGCTGGGTACTGGTGTGAGGGTTGCCAAAAAAATGATGATCAATGCAATTTAAGGTATATTATGATTATAAAAGTTTCTGATGAAAGTGGGGAGGCTTTTCTCTCAATCTTCAATGAGGAGGCTGAGAAAATTGTTGGATGCTCTGCCGGTGAGCTTGACAATCTTAAATCACAGGATGGAGAAGATAGTCCTTATCAAATGAAATTGAAACAAGCTACTTGGGTTCCACATCTTTTCCGAGTTAGTGTTACTCAGAATGAGTATAACAATGAGAAGCGGCAAAGGATTACAGCTCTTTCAGTTGTTCCAGTTGACTTTGCTACCGAGTCAAGACTTCTCCTGGAAGATATATCAAAGATGGGAGTTTCTCAATAA 1830 0.3989 MAKSVIPNAISLILANPSPDSSSLIPDIVVQVLHLKPTGNRFMFNANDGNLKIKAILPSNLNSEVHSGNIQNLGLIRIIDYTVNDFPNKPEKYLIVTKCEPVSSALEAEIKSEVKTADSASSATATILKPKQEMVAKSAAQIVHEQHQNVTRTERKAMSRRVNPLVSLNPYLGNWTIKVTVTSKGNMRTYTNARGEGCVFNVELTDEDGTQIQAKMFNEAARKFYDKFVLGKVYYISKGTLKVANKQFKTVQNDYEMTLNDYSEVEEVADEAGFVPATKFSFVQIDQLGCYVNKNDLVDIVGVVQNVSSTMSIRRKSNNESVPKRDITIADDTKKTVVLSLWNDLATNLGQELLDIADQSPVVAIKSLKVGDFNGVSLSTVSRSIVLINPDIPEVKKLRCWYDSEGKEAAMASIGSGSSPAATYGNKSVYSDREMLSHITSNPSLGDDKPAFFSIRGYISFIRPGQAMWYRACKTCNKKVTESIGAGYWCEGCQKNDDQCNLRYIMIIKVSDESGEAFLSIFNEEAEKIVGCSAGELDNLKSQDGEDSPYQMKLKQATWVPHLFRVSVTQNEYNNEKRQRITALSVVPVDFATESRLLLEDISKMGVSQ 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1352 609 Gene3D - 416 605 IPR012340 -
Lal7g1352 609 SUPERFAMILY Nucleic acid-binding proteins 280 407 IPR012340 -
Lal7g1352 609 CDD RPA1_DBD_C 435 604 IPR013955 -
Lal7g1352 609 CDD RPA1_DBD_A 164 267 - -
Lal7g1352 609 Pfam Replication factor-A C terminal domain 452 598 IPR013955 -
Lal7g1352 609 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 5 603 - -
Lal7g1352 609 CDD RPA1_DBD_B 297 403 - -
Lal7g1352 609 Pfam Replication factor-A protein 1, N-terminal domain 7 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lal7g1352 609 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 8 604 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal7g1352 609 Pfam OB-fold nucleic acid binding domain 175 263 IPR004365 GO:0003676
Lal7g1352 609 SUPERFAMILY Nucleic acid-binding proteins 431 605 IPR012340 -
Lal7g1352 609 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
Lal7g1352 609 Gene3D - 161 271 IPR012340 -
Lal7g1352 609 SUPERFAMILY Nucleic acid-binding proteins 164 272 IPR012340 -
Lal7g1352 609 Pfam Replication protein A OB domain 292 388 IPR031657 -
Lal7g1352 609 Gene3D - 275 415 IPR012340 -
Lal7g1352 609 PANTHER REPLICATION FACTOR A 1, RFA1 5 603 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal7g1352 609 Gene3D - 5 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1352 Lal-Chr7 18689587 18692790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1352 1 609 Core DNA Replication Machinery Family AT5G08020 66.885 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1352 K07466 - qsu:112017680 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1352 7 18689587 18692790 Lal7g1352 7 18689587 18692790 ECH
Lal7g1352 7 18689587 18692790 Lal19g1448 19 17080162 17083417 LSH