Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1343 ATGGAATCTTGGAGTTGTGTTTCTGAAGAAAAGGGGTATGTCTCAAATCACACACTCTCCCCACCTAATACCCTTGGGAGGAGTAAAAATTCAATCTTGGGATGGGAACTGAAAACCCCATGTACCTTTTCTAATGATTTGTTACTCTTGGCTCATCCAAACATTGATAATCATCAAGGTTTTCAGGATTTGGGGTATCCTGAAATGTTGGGGGAAAACTTATATGATGATTTGGATGGTGGACATGGTGCCAGAATCACTGGTACTATTCTTATGGCTGCTACCCCAAATCCATTTTCTGCAAGAGGGGGCTGCAATTTCAGGATTCCAAACTCTAATGGTACCGATTCGTTCATTGATTTGAAGCTGGGACGATTTGTTGATCATGGGGAAGCCATTGATGCAGCATTTTCCAAAGGAGCACCAATTATGTCATCTTATGAGTCATCCACACCCTCCAAGCGAGTAAGGGCTTCGGGGTTGCGCTCGCAGACCGCATACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGTTCCTGTAAGGATTACCACAAGAGGCATAGAGTTTGTGAGGTTCACTCTAAGACTGCCATAGTTATAGTGAATGGCATTGAGCAAAGGTTTCATTTGCTGGCAGAATTTGATGATGGTAAGCGCAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGCGTAGAAGAAAACCACAAATGGGTATTAACTCCGGAAAGGCTGGGAGGTTGCTTCAGCCATGTGGTGACCCTGTGGTTGTTGCAGATAGCAGATTCCAGGGGACCATGCTAACATCAGCATCTTATATCTGCCCAGATATGCTCCCTAGTCGGGCCATGCCTTCTGAGAAATATGAAATGAGTGACTTCTGGAGACCTAATAAAGCAGAACATGGGGCAGGTTTTAGGCATCTTTCCTCTATACCTAGCTCCAATGGATATTCTCAGTCAAGATCCCTATTTCCTTCATATAACCAAAAACAGTTTCCTTTTCTTCATGAAAATGGTGCTACATCCACTACAGGAAGCATCTTCTGTGACAACAATATCCAATATCCACCTGTCCTTGGGCCCCAAAATTCTGGGTCAAAATCAGTATACCACCAGGATACCTCCTTAAGAAGTGAGGACTTCAATGTTTTTGATACAACATCAACTGTTCAAGGAGTATCAGGAATTTCAGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCGTCAAGCCAATCATCTGAAATTCCCCTGTCTCACTCCTCGGTTTTTCCAAACAGCCATATTTATCACTACAACATTAGTCAGGTCTCTGAGAAGGTGGGAATAAGCTCACTGACTTCTTCAAGCCATGTGTCAGATAGGTTTCCATCCGAAATGAATCATGTGGATGGAAATCATCTTAATCCTGTGCTGATACCAGACAATGAGACTTATATTGTAAACTTTGAAATGGCAGATGAGATTTTCCAAGGTTCAGATTTTTTGAATGTGAAAGACCGAATTTCTTCTGAAAATGGCGCAACCATTGACTTGCTACAACTGTCGTCACAGCTTCAGCGTGTTGAGCACCACAGGCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTTTTGCACTCTTCGGATTACTTGA 1644 0.4313 MESWSCVSEEKGYVSNHTLSPPNTLGRSKNSILGWELKTPCTFSNDLLLLAHPNIDNHQGFQDLGYPEMLGENLYDDLDGGHGARITGTILMAATPNPFSARGGCNFRIPNSNGTDSFIDLKLGRFVDHGEAIDAAFSKGAPIMSSYESSTPSKRVRASGLRSQTAYCQVYGCNKDLSSCKDYHKRHRVCEVHSKTAIVIVNGIEQRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGINSGKAGRLLQPCGDPVVVADSRFQGTMLTSASYICPDMLPSRAMPSEKYEMSDFWRPNKAEHGAGFRHLSSIPSSNGYSQSRSLFPSYNQKQFPFLHENGATSTTGSIFCDNNIQYPPVLGPQNSGSKSVYHQDTSLRSEDFNVFDTTSTVQGVSGISDSCALSLLSSQSQNSSSQSSEIPLSHSSVFPNSHIYHYNISQVSEKVGISSLTSSSHVSDRFPSEMNHVDGNHLNPVLIPDNETYIVNFEMADEIFQGSDFLNVKDRISSENGATIDLLQLSSQLQRVEHHRQSLQVKQENDSFCTLRIT 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1343 547 Gene3D - 159 222 IPR036893 GO:0003677|GO:0005634
Lal7g1343 547 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 547 - -
Lal7g1343 547 ProSiteProfiles Zinc finger SBP-type profile. 165 235 IPR004333 GO:0003677
Lal7g1343 547 SUPERFAMILY SBT domain 166 238 IPR036893 GO:0003677|GO:0005634
Lal7g1343 547 Pfam SBP domain 168 234 IPR004333 GO:0003677
Lal7g1343 547 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 547 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1343 Lal-Chr7 18632556 18635852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1343 119 279 SBP-box Gene Family AT1G69170 52.976 7.60e-46 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal7g1343 SBP 6.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1343 - - gmx:100817547 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1438 19 17027809 17031642 Lal7g1343 7 18632556 18635852 ECH
Lal7g1343 7 18632556 18635852 Lal7g1343 7 18632556 18635852 ECH
Lal7g1343 7 18632556 18635852 Lal19g1438 19 17027809 17031642 LSH