Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1340 ATGGGGAGAGGAAGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATAGGCAGGTAACTTTCTCAAAGAGAAGATCTGGGTTGCTGAAGAAAGCACATGAGATCTCTGTGCTTTGTGATGCAGAAGTGGCTCTCATAGTTTTCTCCACAAAAGGCAAGCTTTTTGAGTACTCCAGCGACCCCTGTATGGAAAGAATTCTTGAACGGTATGAGAGGTATTCATATACGGAAAGGCAGGTTGATGCCAATAATGATCAGGGATCAAATGAAAACTGGATTTTGGAACATGCAAAGCTCAAGGCAAGAGTGGAAGTGCTACAGAGAAATCAAAGGAATTTCATGGGAGAAGATCTGGATAGCCTAAGTCTGAAAGAGCTTCAGAATTTGGAACAACAACTTGATTCTGCTCTCAAACACATAAGAACACGAAAGAATCAACTCATGTATGAATCTATTTCTGGGCTTCAGAAAAAGGATAAAGCACTTCAGGAACAAAACAACATTCTCGCAAAGAAGATAAAGGAGAAAGAGAAGGCTTTGGCTCAGAAGGAGCAACAGAAAGTGCAAAATGGTGTGGATGTTAGCTCTGTCCTTGTAAATCAACCATTGGAGTCCTTGAATGTTGGAGGTGGATCAGGAAATAATGAAGGAACTTCAACGCAAACTCGAGCTACCCCTCTTCTTCCACCATGGATGCTTCGTCCCATAAATGAATAG 717 0.417 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYTERQVDANNDQGSNENWILEHAKLKARVEVLQRNQRNFMGEDLDSLSLKELQNLEQQLDSALKHIRTRKNQLMYESISGLQKKDKALQEQNNILAKKIKEKEKALAQKEQQKVQNGVDVSSVLVNQPLESLNVGGGSGNNEGTSTQTRATPLLPPWMLRPINE 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1340 238 Coils Coil 89 109 - -
Lal7g1340 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal7g1340 238 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal7g1340 238 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 209 - -
Lal7g1340 238 Coils Coil 123 146 - -
Lal7g1340 238 Coils Coil 159 189 - -
Lal7g1340 238 MobiDBLite consensus disorder prediction 205 225 - -
Lal7g1340 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lal7g1340 238 Pfam K-box region 85 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal7g1340 238 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lal7g1340 238 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lal7g1340 238 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Lal7g1340 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal7g1340 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal7g1340 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal7g1340 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal7g1340 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal7g1340 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1340 Lal-Chr7 18596258 18608189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1340 1 210 MADS-box Gene Family AT1G26310 60.268 1.52e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal7g1340 K-box 2.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1340 K09264 K09260 gmx:100784742 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal22g1283 22 15545518 15563101 Lal7g1340 7 18596258 18608189 ECH
Lal7g1340 7 18596258 18608189 Lal7g1340 7 18596258 18608189 ECH