Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1332 ATGGCAGATGTTACCACCTACGACGATTTGGATTCGATTACATTAGCGTACTTTTCCCACTCCTCCCCCGATTTCAATTTCGATTTTTATTCTTCCGAACCGGAATTCCCACCCACCCTCGAACCCGATTCAAATTCCCTTTTCGACCGCCATAACCAGATCAATTTCCCCAATGATATCTTTCACCAATGTGTCGATCAATCTCAGGTAATTGGCCATGGATATTTCGTCACCGATTTAGGGTTTGGCGTCGAAAGGGGCGGGGTTTCTATTTCTGAATCAAATGAGGCGCCGTTTCACAACTGCGTTTGCGTTACGGGGTTGGGATCGGATTCTGATGAGGAAGAAGAAGAGAGTGAGGTTTTGGAGAATTGCGTGAATTCTGATGAAGAGTATAACGATGTAAATGATGGCGTTTCGAACATTCCCTTGTGTTGGGATTCGCTTCAGTTGGATGAGGATAACAAGGAGATAATTGAGAATTTTGAGTGGGAGGAAGTGGATGTGGATGGTAGAGTTGATGAAATAGAAGTTTTGAGCATGCTCACCATTGATGATGATAGATTGGTTTCGGTTTCGGGGATTCCTGTGATTGAAGAAGAGGAAGAAGATGTGAGTGTTGTGAGAATGGGTAGGATGGAGAATTTGGAGTGGGAAGTGTTATTGAATGCTAATAATTTGAATACAATCACAAGTCCTGATTTGGATAATGATGATGATTTAGAAGAGCCTTATTTTAGTGATCATGATGAATACATATATGCTTCTGATTATGAAATGATGTTTGGTCAGTTTGTTGAGAATGGACACACTTTAAGGCCTCCGGCTTCTGTGTCCATTGTTCGCAATCTGCCATCAGTGGTTGTGACTAAGGAAGATGTGGACAACAACAATGCACTTTGTGCTGTTTGCAAAGATGACTTTGCTGTGGCAGAACAAGCTAAGGAGCTGCCGTGTTTACATCGATGCCATGGTAATTGCATTGTACCTTGGTTGGCCATTCGGAACACTTGCCCTGTTTGCCGCTATGACTTTCCGACCGATGATGCTGATTATGAGCGTATGAGGGCCAATAGGTCTGCTCCAAGGATGTGA 1095 0.4329 MADVTTYDDLDSITLAYFSHSSPDFNFDFYSSEPEFPPTLEPDSNSLFDRHNQINFPNDIFHQCVDQSQVIGHGYFVTDLGFGVERGGVSISESNEAPFHNCVCVTGLGSDSDEEEEESEVLENCVNSDEEYNDVNDGVSNIPLCWDSLQLDEDNKEIIENFEWEEVDVDGRVDEIEVLSMLTIDDDRLVSVSGIPVIEEEEEDVSVVRMGRMENLEWEVLLNANNLNTITSPDLDNDDDLEEPYFSDHDEYIYASDYEMMFGQFVENGHTLRPPASVSIVRNLPSVVVTKEDVDNNNALCAVCKDDFAVAEQAKELPCLHRCHGNCIVPWLAIRNTCPVCRYDFPTDDADYERMRANRSAPRM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1332 364 Pfam Ring finger domain 301 342 IPR001841 -
Lal7g1332 364 SMART ring_2 301 341 IPR001841 -
Lal7g1332 364 SUPERFAMILY RING/U-box 281 348 - -
Lal7g1332 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 109 357 - -
Lal7g1332 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 348 IPR013083 -
Lal7g1332 364 ProSiteProfiles Zinc finger RING-type profile. 301 342 IPR001841 -
Lal7g1332 364 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CIP8-LIKE ISOFORM X1 109 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1332 Lal-Chr7 18544675 18545769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1332 142 348 C3H Transcription Factor Family AT5G60820 44.037 3.33e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1332 - - adu:107469048 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1332 7 18544675 18545769 Lal7g1332 7 18544675 18545769 ECH
Lal14g1874 14 18209171 18210367 Lal7g1332 7 18544675 18545769 LSH