Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1316 ATGTTTGAACTCAAAACCGTTGAAGGCTTTCTTACGCACGAAAAACCAACAATTTTATCAGACCCAACAGCAAAATTTTCCTTTGCATCCTCGGAGGGTGGTTCAGTTGACACAAATGTTCTTAAATTGCTCGGTGAATCACAAAGTCGGAAACTTTACAACAAAAAACTAGCTGAAAGAATTGTGGAGCTAGAAGAGAGAGAAGAAGAAACCGTTGGATTAAGGAGCGAAATCAACGATTGTCAGTTAAGCGGGGTAGCTCAGATTTTGAAGGAAGGGTTTAACGAGGTCGAGAAGAAGAAGAAAGTGGAAGCAGTGATTATGGCAGAAGAACAAGAAAACAATCTTCATCTTTCTCCTATGGACGAAACAAGAAAGAAAAAGAAAAAGAAAAACAACAAGAAAAGATCTCGTGATACTGAAACCGACGAGGAAGCACCACAAGTGGAGAAAAATGGAGAATCCATGGAGAATGAAGAGGTCGAAGAAGGTGAAGTCAAAATTCATAAGAAGAAGAAGAAGGGTGGTTCTGGAATTATGAGTACAGAAGCATTTGAATCACTGGGATTATCTGAAGCTACATACAAAGCAATTAATGATATGGGTTTCGAGAACATGACTCAGATTCAAGCAAGAGCAATTCCACCACTTTTGATTGGTAAAGATGTTCTTGGTGCTGCTAGAACTGGTTCTGGTAAAACCCTAGCTTTTCTTATCCCTGCTGTTGAACTCTTATACAATGTCCAATTTACTCCTCGTAATGGAGCTGGTGTCATTGTCATTTGTCCCACTAGAGAACTTGCAATTCAGACGCATGCTGTGGCGAAGGAGCTTCTGAAGTATCATTCACAAACTCTTGCATTGGTTATTGGAGGGGCAACTAGAAAAATTGAAGCCGAACGCCTTGCTAAAGGGGTCAATCTATTGGTAGGAACTCCTGGTCGTCTTCTTGATCATCTTCAAAATACAAAGGGATTCATGTATAAAAACCTGAAGTGCCTTATGATTGATGAAGCTGACAGGATACTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAATAGGCAAACAGCTTTATTTTCAGCTACACAAACGAAGAAGGTTGAGGATCTTGCGCGGTTGTCATTTCAAACTACTCCTATCTATATTGATGTGGACGATGGGAGAACCAAGGTCACAAATGAAGGATTGCTGCAGGGATATGTTGTTGTTCCATGTGCCAAGCGATTTATTGTTCTCTATTCTTTCTTGAAGAGACACAAGTCAAAAAAAGTGATGGTGTTTTTCTCTTCATGCAACTCTGTGAAATTCCATGCAGACCTTCTTAATCTCATTCAGTTGAATTGCTTAAGTATTCATGGAAAACAAAAGCAGCAGAGCCGGACAACTACCTTCTTTGACTTCTGCAAAGCAGAAAGTGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGGCTTGATATACCAGCTGTGGACTGGATTGTACAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGGGGAAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAACTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCTGTGAAAGAGTATGCATATGATGAATCAAAGGTGGCCAATGTGCATAACCAACTGCAACTTATCTCACAAAGGACCATCTGGATTGTGCAGGAGAATTTGGTAGCTAACAACTTTTACTTGAACAAGATGGCTAAAGAAGCTTATAGATCATATATATTAGCTTACAATTCACATTCAATGAAGGACATATTCAATGTTCACCGCCTTGATATGCCGGCCATTGCTGCTTCATTCTGTTTTTCAAACCCACCAAATGTGAGTGTGAACATAAACAGCAGTAAGCAAAGGAACAAAATGCGTAAAGTTGATGGAAGTAGACATGGATTCAGTGACACCAATCCTTATGGAAAGAGAAACGTTGATGATATTCGTCAGTTTGTGAGGCATTAG 2043 0.4033 MFELKTVEGFLTHEKPTILSDPTAKFSFASSEGGSVDTNVLKLLGESQSRKLYNKKLAERIVELEEREEETVGLRSEINDCQLSGVAQILKEGFNEVEKKKKVEAVIMAEEQENNLHLSPMDETRKKKKKKNNKKRSRDTETDEEAPQVEKNGESMENEEVEEGEVKIHKKKKKGGSGIMSTEAFESLGLSEATYKAINDMGFENMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVQFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLALVIGGATRKIEAERLAKGVNLLVGTPGRLLDHLQNTKGFMYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHKSKKVMVFFSSCNSVKFHADLLNLIQLNCLSIHGKQKQQSRTTTFFDFCKAESGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDESKVANVHNQLQLISQRTIWIVQENLVANNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDMPAIAASFCFSNPPNVSVNINSSKQRNKMRKVDGSRHGFSDTNPYGKRNVDDIRQFVRH 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1316 680 CDD SF2_C_DEAD 404 534 - -
Lal7g1316 680 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 183 211 IPR014014 GO:0003724
Lal7g1316 680 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 139 669 - -
Lal7g1316 680 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 563 IPR001650 -
Lal7g1316 680 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 389 IPR014001 -
Lal7g1316 680 MobiDBLite consensus disorder prediction 643 668 - -
Lal7g1316 680 MobiDBLite consensus disorder prediction 136 155 - -
Lal7g1316 680 Pfam Domain of unknown function (DUF4217) 582 637 IPR025313 -
Lal7g1316 680 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 335 343 IPR000629 -
Lal7g1316 680 SMART ultradead3 202 407 IPR014001 -
Lal7g1316 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 545 IPR027417 -
Lal7g1316 680 Gene3D - 405 656 IPR027417 -
Lal7g1316 680 PANTHER RNA HELICASE 139 669 - -
Lal7g1316 680 MobiDBLite consensus disorder prediction 114 177 - -
Lal7g1316 680 CDD DEADc_DDX18 194 391 IPR044773 GO:0003724|GO:0005524
Lal7g1316 680 SMART DUF4217_3 576 639 IPR025313 -
Lal7g1316 680 Pfam DEAD/DEAH box helicase 207 378 IPR011545 GO:0003676|GO:0005524
Lal7g1316 680 SMART helicmild6 443 524 IPR001650 -
Lal7g1316 680 Gene3D - 114 393 IPR027417 -
Lal7g1316 680 Pfam Helicase conserved C-terminal domain 419 523 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1316 Lal-Chr7 18473978 18480132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1316 178 543 Eukaryotic Initiation Factors Gene Family AT3G19760 28.883 7.72e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1316 K13179 - gmx:100797375 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1316 7 18473978 18480132 Lal7g1316 7 18473978 18480132 ECH