Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1307 ATGTATTCCTCAAATAGCTCAATCAATGGCAATGACCTAATTCCACACCCCATCCAGTTTTACTCCTCTAGGCCTTTTTCCAATATTGAAAGCAACCCAACCTCGACACAATTAGAAACAACCTATTCATGTGATATTCTCTCTCCTCATTCTCCTTTGTCCTATTTTCAATTTCCTTTTCCCTTTGAAGACCATGAAATTTTCCTTGAACAACATCATCATGACTTACTTCAACACCAACATTCTCTACCTGTTGAGACTGTTAATGATGTTAACATGGAGAAGGCTACTATTATTCCTGATCATAAAGAGGGACAAGGTACGGATCCGCAGGTTCCAATGAGAAAATCTAGCAAGAGAGATCGGCACAGTAAGATCAATACAGCTAAAGGACTAAGAGATCGAAGAATGAGATTGTCTCTTTTAGTTGCAAAGAGGTTTTTCAGTCTGCAAGACATGCTAGGCTTTGACAAAGCTAGCAAAACTGTGGACTGGTTGCTGAACCAAGCAAAAGATGAGATCAAGCAACTAGCAAGAGAAAAGAATATTCATGTCAATAGTGCATCTTCGACTTCTGAATGTACTGAAGCTATGTCAAGCTTGGATGAGATAGCAGTGAGTGGAGATCAAGAACAAGTTAAGGGAGTAACAAAGAGAAGAAGAATTAAGGTTTGTAGAAAGAGTGCTTTCAAGCATGTTGGTAAGGAATCAAGGGAAAAGGCAAGAAAAAGAGCAAGAGAAAGGACCAGAGAGAAGATGATGAGGACTCAGTTGCTAGGTGAAGCACATGAATCAAAGCAATATGACGACGCGGCAACAAACAATAATCTTAACTATTTATGTTCTTGGAATCCCTTTGATATTGTTAAAGAGTGTGCAGGTACTCAGAGCCAAAGTGTTGATCCATCCTTGGGTATGATGAATGAGGTTGAAGAACGAAGCTCTCAAGGGAAGGAACATTTGGGAACTGAAGAGGATGTAGAGCAAGAAGATTCTCTAGTGATTATGAACAAATGGAGCCCAACCATGATTTTCAATTATTCTTTGAGTAACACAGGAATCCTTCAAGAGCATCAATTTTCAGAATTTCAGTCCATGGGAAAACCTTGGGGGGCTTACAACAATCACAACATCTAG 1137 0.3949 MYSSNSSINGNDLIPHPIQFYSSRPFSNIESNPTSTQLETTYSCDILSPHSPLSYFQFPFPFEDHEIFLEQHHHDLLQHQHSLPVETVNDVNMEKATIIPDHKEGQGTDPQVPMRKSSKRDRHSKINTAKGLRDRRMRLSLLVAKRFFSLQDMLGFDKASKTVDWLLNQAKDEIKQLAREKNIHVNSASSTSECTEAMSSLDEIAVSGDQEQVKGVTKRRRIKVCRKSAFKHVGKESREKARKRARERTREKMMRTQLLGEAHESKQYDDAATNNNLNYLCSWNPFDIVKECAGTQSQSVDPSLGMMNEVEERSSQGKEHLGTEEDVEQEDSLVIMNKWSPTMIFNYSLSNTGILQEHQFSEFQSMGKPWGAYNNHNI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1307 378 ProSiteProfiles TCP domain profile. 119 177 IPR017887 -
Lal7g1307 378 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 25 343 IPR005333 GO:0003700
Lal7g1307 378 MobiDBLite consensus disorder prediction 99 129 - -
Lal7g1307 378 Pfam TCP family transcription factor 118 255 IPR017887 -
Lal7g1307 378 ProSiteProfiles R domain profile. 235 252 IPR017888 -
Lal7g1307 378 PANTHER TRANSCRIPTION FACTOR TCP18 25 343 - -
Lal7g1307 378 MobiDBLite consensus disorder prediction 309 329 - -
Lal7g1307 378 Coils Coil 167 187 - -
Lal7g1307 378 MobiDBLite consensus disorder prediction 312 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1307 Lal-Chr7 18425551 18427032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1307 2 249 TCP Transcription Factor Family AT3G18550 33.677 5.20e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lal7g1307 TCP 1.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1307 - - lang:109345082 591.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1416 19 16864961 16866872 Lal7g1307 7 18425551 18427032 ECH
Lal13g1717 13 16799802 16801271 Lal7g1307 7 18425551 18427032 ECH
Lal24g1302 24 14355925 14357941 Lal7g1307 7 18425551 18427032 ECH
Lal6g1641 6 19134796 19136403 Lal7g1307 7 18425551 18427032 ECH
Lal22g1320 22 16025288 16026476 Lal7g1307 7 18425551 18427032 ECH
Lal7g1307 7 18425551 18427032 Lal7g1307 7 18425551 18427032 ECH
Lal14g1863 14 18152958 18154429 Lal7g1307 7 18425551 18427032 LSH
Lal7g1307 7 18425551 18427032 Lal19g1416 19 16864961 16866872 LSH