Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1274 ATGAGTTTTTTCGATGATTTGCCACCTTTTATTTCTTCATCGCCACCTTATGCTTCTGCCCCACTAACCGATGCCATTGTTTTAAGTGGTCAACCACAGTCACCATCTGATGATCATGATCAATCCCCTACGTTCAAGAGATCCACAACAACTTTCTCTGAGAGCAACAACAATCACTCCAATGAACTTCCATATCCTCCTAGAATGAGGATGATGCATCCACAGAACAACAACAACAACAACAACCGTGTCTCTAATAAATTGGGAACAGGAACGGGACACATTTTCTTCAAGACTCGAATGTGTACAAAGTTCAGGCTTGGTTCTTGTAGGAATGGTGAGAATTGCAACTTTGCACATGGAATTGAAGATATGAGGCAGCCACCACCTAATTGGCAGGAGCTCGTTGGGTTGCGCGGCAGCAATGAAGAACAGCATTCAGCTGCGTGGAATTGGGATGATGATCAGAAAATTATACTTAAGATGAAGCTGTGCAAGAAGTACTGTAATGGGGAGGAATGTCCTTATGGTGAAAGGTGTAGTTTTCTTCATGAGGAACCTTCCAAGTTCAGGGATGATTCTGTAAGGATTAGAGAGAGCTCAGTTATCAGAATCGGGACTAATGAATCCCCAAAGTCCAACGAGGATGGCTATGATTATAATAATTCAGAAACTGATAAGGCTGTGGTTATGAATAATGTGGGTTTAAATGCTTATAGGGGAAAAGTGAGGTCTACTTTCTGGAAGACTAAACTATGTATTAAGTGGGAGACTACAGGCCAATGCCCCTTTGGGGAGGGTTGTCACTTTGCACATGGCCAATCAGAAATTTTTGATCAAATAATGGAACATAAATTCATCCTGTTTCTAGAGTTGCAAGTTCTTGGTGGACACATGGATACAGAAGCTGCAAGTTCCATTATTCCAATTGCAACCTATGCTACCATTCCAACATTGCCAAAAGTTACATCTGTTCCTGTCATTGATGATGCACCTCCTCTTAGCAACATAGCAAGTGCACCTCCTCTTAGCAACATAGCAAGTGCACCTCCTCTTCGCAACATAGCACGTGCACCTCTTGCAAATGAAGTTGAGCCAGGGAAGAAGTCCTTATTGAAGTGGAAAGGACCAAAGAAGATCAATCAAATTTATGCTGATTGGATTGATGATGTGCCGCTTGAGTAA 1185 0.4211 MSFFDDLPPFISSSPPYASAPLTDAIVLSGQPQSPSDDHDQSPTFKRSTTTFSESNNNHSNELPYPPRMRMMHPQNNNNNNNRVSNKLGTGTGHIFFKTRMCTKFRLGSCRNGENCNFAHGIEDMRQPPPNWQELVGLRGSNEEQHSAAWNWDDDQKIILKMKLCKKYCNGEECPYGERCSFLHEEPSKFRDDSVRIRESSVIRIGTNESPKSNEDGYDYNNSETDKAVVMNNVGLNAYRGKVRSTFWKTKLCIKWETTGQCPFGEGCHFAHGQSEIFDQIMEHKFILFLELQVLGGHMDTEAASSIIPIATYATIPTLPKVTSVPVIDDAPPLSNIASAPPLSNIASAPPLRNIARAPLANEVEPGKKSLLKWKGPKKINQIYADWIDDVPLE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1274 394 SUPERFAMILY CCCH zinc finger 159 186 IPR036855 GO:0046872
Lal7g1274 394 SMART c3hfinal6 247 274 IPR000571 GO:0046872
Lal7g1274 394 SMART c3hfinal6 96 122 IPR000571 GO:0046872
Lal7g1274 394 SMART c3hfinal6 159 186 IPR000571 GO:0046872
Lal7g1274 394 Pfam CCCH-type zinc finger 100 121 IPR041367 -
Lal7g1274 394 MobiDBLite consensus disorder prediction 28 67 - -
Lal7g1274 394 Gene3D - 241 278 - -
Lal7g1274 394 Gene3D - 158 189 - -
Lal7g1274 394 Gene3D - 92 127 - -
Lal7g1274 394 PANTHER CCCH ZINC FINGER/TIS11-RELATED 35 390 IPR045877 GO:0003729
Lal7g1274 394 SUPERFAMILY CCCH zinc finger 246 277 IPR036855 GO:0046872
Lal7g1274 394 SUPERFAMILY CCCH zinc finger 94 127 IPR036855 GO:0046872
Lal7g1274 394 ProSiteProfiles Zinc finger C3H1-type profile. 247 275 IPR000571 GO:0046872
Lal7g1274 394 ProSiteProfiles Zinc finger C3H1-type profile. 159 187 IPR000571 GO:0046872
Lal7g1274 394 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 161 184 IPR000571 GO:0046872
Lal7g1274 394 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 274 IPR000571 GO:0046872
Lal7g1274 394 MobiDBLite consensus disorder prediction 28 63 - -
Lal7g1274 394 ProSiteProfiles Zinc finger C3H1-type profile. 96 123 IPR000571 GO:0046872
Lal7g1274 394 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 35 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1274 Lal-Chr7 18157517 18160483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1274 249 297 C3H Transcription Factor Family AT1G68200 42.857 8.73e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal7g1274 zf-CCCH 2.5e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1274 7 18157517 18160483 Lal7g1274 7 18157517 18160483 ECH
Lal14g1843 14 18040471 18042994 Lal7g1274 7 18157517 18160483 LSH
Lal7g1274 7 18157517 18160483 Lal19g1396 19 16691129 16694092 LSH