Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1263 ATGGTACAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCTTGGGTTTCCGAAATTCGCCACCCTCTTCTGAAAAAAAGAGTGTGGTTAGGCACATTTGAAACAGCAGAAGAAGCTGCACGAGCCTATGATCAAGCTGCGATTTTGATGAGTGGACGAAATGCCAAAACCAATTTCCCAATAACCCAAACACCAGAAGGTGACACCAAGATTATGACTAGTAACAATGATAACACCACTTCCTCCATGTCCAAGGATCTAGAAGAGACAATACATGCTAAGCTTCGAAAATGTGGCAAGGTACCTTCGCCATCCATGACATGTTTGAGGCTTGACACTGAGAATTCTCACATTGGAGTGTGGCAAAAGCGTGCTGGCCAACGTTCTGATTCAAATTGGGTCATGACTGTTCAGCTGGGAAAGAAAAAGAGTGTTAAAAGCAATGAGGGTGGTGAAGATTGTAGTAGTAGTAGTTCTCTACCTTCTTCTGAAAAGAAGGATAATAATAATAATCAGTTTCTATCAGAACTAGTGGAAGGGCATGATCAGGAACAAGTGCAGGTGAGGACACAAATGGATGAAAAAGACAGAATTGCCCTTCAAATGATTGAAGAACTCCTCAATAGGAACTGTCCTAGCCCATCAACTTTTAACAGTATTGAACAAGGAGTTGATTCCAGCTTTTTTCTTTAA 702 0.4174 MVQSKKFRGVRQRHWGSWVSEIRHPLLKKRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDTKIMTSNNDNTTSSMSKDLEETIHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGQRSDSNWVMTVQLGKKKSVKSNEGGEDCSSSSSLPSSEKKDNNNNQFLSELVEGHDQEQVQVRTQMDEKDRIALQMIEELLNRNCPSPSTFNSIEQGVDSSFFL 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1263 233 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Lal7g1263 233 MobiDBLite consensus disorder prediction 61 85 - -
Lal7g1263 233 MobiDBLite consensus disorder prediction 144 172 - -
Lal7g1263 233 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Lal7g1263 233 MobiDBLite consensus disorder prediction 153 172 - -
Lal7g1263 233 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Lal7g1263 233 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 219 - -
Lal7g1263 233 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lal7g1263 233 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Lal7g1263 233 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lal7g1263 233 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lal7g1263 233 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lal7g1263 233 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1263 Lal-Chr7 18118597 18119901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1263 1 213 AP2-EREBP Transcription Factor Family AT1G15360 57.798 9.46e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal7g1263 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1263 - - gmx:100787517 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1263 7 18118597 18119901 Lal21g0338 21 2263238 2264735 ECH
Lal7g1263 7 18118597 18119901 Lal4g0221 4 1387798 1389541 ECH
Lal7g1263 7 18118597 18119901 Lal8g1574 8 20051974 20062995 ECH
Lal7g1263 7 18118597 18119901 Lal7g1263 7 18118597 18119901 ECH
Lal7g1263 7 18118597 18119901 Lal19g1382 19 16631403 16632663 LSH