Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1249 ATGTTCTTCCTCCGAGTCCACTCAGTGGAATCGGAGAAGCCTCTTGATCCTGAATGGAACCCTAAATTGAGAGAAAGAAGAGGCGTACTTCACTTGTTCCGAACTTCTTCTTCTCATTCTTCTTCTCATCATTCTTCTCTCCTTTTCATTCTCGCTGTTCCTAATTATCTCTCTTTCCATGATTTCATTCGTTTTTGTGGTCCCCACCTTCATCATCTGAACTCTCTTCTTTTCCTCCGTAATGATGCCATGGAAGATCGTTACACTGTTTTGCTAAATCTTTCCGATCATTTTGCCGCTCATGCTTTTTATAACAATCTTAATGCACAAAAGTTTTCTCCTTCTGAGGCAGAGGTATGCCATATACTATTTTTGGATTCTGTGGAGTACTCAGAGTATGCAGAAGTCGCTGGGACTCCTCCTCCTGGTTGTATAGAAATACCAACTTGCCCTGTTTGCCTTGAGAGATTGGACCCGGATACAAGTGGAATACTCACAACACTTTGTGACCACTCATTTCAATGTCCTTGTGTCTCTAAGTGGACTTACTTATCTTGCCAGGTCTGTCGATTCTGTCAGCAGCAGGATGAGAAGCCAAACTGTTATGTTTGTGGAACATTAGATGATGTCTGGGTTTGTATGATTTGTGGATTTGTTGGTTGTGGAAGATATAAAGAAGGACATGCTATTCGGCATTGGAAACAAACACAGCATTGCTATTCTCTTGATTTTAGAACACAGCAAATTTGGGATTATGTGGGTGATAGTTACGTCCATCGACTGAACCAGAACCAGTCTAAAATTGATGGCAAGTTGGAGGGGAAGTTTCGCTGTATGTCATTGGAAGAGAATTGTGGTATGTGTGAATGTCGTGAAGATTCAGGAATGGATGAGGCCCTTTTCAACAGCAAAGTTGAAGCAAAGGTGGATGAATACAACCGACTTCTAGCATCTCAGTTGGAGACTCAAAGACAATATTATGAATCTTTGCTCATAGAGGCGAAAAGTAAAGTGGAAAGTTCTGTATCTGAAGCAGTGGAGAAAGCTGTAGCTTCCGGAATGCAGGATATGCAAAATGAACTGGAGAGGTGTACAGAAGAAAGAAATGTGGTTGCTGAGGCCAATCGGAAGCTCATTAAAAATCAAGAGATTTGGCGAAAGAAGGTTAAAGAAGCTGAAGAGAGCAAAAGCCTTCAGGCCAACGCTTCATTTCCCGTTGTCATTACAGATCGAATTCTCAAGTGGGAAGCTGCATCTGCAAAATCGTTGAACGAGAAAATAGTTGATCTGGAGGAACAGATTAGGGATATCAAGATATTTTTAGAAGCGCAAAAAACAATTGATAGGATGTCAGATTCAACTGAAATCAAGGACGGAACAATCTTACCAGTTGCTTATGAGCAGTCTTCTCCAAGCAACAGCAAGAAAAACAGAAAATCTGGTCGAAGGCGGAACTAA 1458 0.4136 MFFLRVHSVESEKPLDPEWNPKLRERRGVLHLFRTSSSHSSSHHSSLLFILAVPNYLSFHDFIRFCGPHLHHLNSLLFLRNDAMEDRYTVLLNLSDHFAAHAFYNNLNAQKFSPSEAEVCHILFLDSVEYSEYAEVAGTPPPGCIEIPTCPVCLERLDPDTSGILTTLCDHSFQCPCVSKWTYLSCQVCRFCQQQDEKPNCYVCGTLDDVWVCMICGFVGCGRYKEGHAIRHWKQTQHCYSLDFRTQQIWDYVGDSYVHRLNQNQSKIDGKLEGKFRCMSLEENCGMCECREDSGMDEALFNSKVEAKVDEYNRLLASQLETQRQYYESLLIEAKSKVESSVSEAVEKAVASGMQDMQNELERCTEERNVVAEANRKLIKNQEIWRKKVKEAEESKSLQANASFPVVITDRILKWEAASAKSLNEKIVDLEEQIRDIKIFLEAQKTIDRMSDSTEIKDGTILPVAYEQSSPSNSKKNRKSGRRRN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1249 485 PANTHER BRAP2 RING ZNF UBP DOMAIN-CONTAINING PROTEIN 1 11 485 IPR033273 GO:0000151|GO:0004842|GO:0010029|GO:0016567
Lal7g1249 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 166 273 IPR013083 -
Lal7g1249 485 Pfam Zn-finger in ubiquitin-hydrolases and other protein 186 261 IPR001607 GO:0008270
Lal7g1249 485 ProSiteProfiles Zinc finger UBP-type profile. 184 279 IPR001607 GO:0008270
Lal7g1249 485 SMART Zf_UBP_1 200 249 IPR001607 GO:0008270
Lal7g1249 485 SUPERFAMILY RING/U-box 166 265 - -
Lal7g1249 485 Pfam BRCA1-associated protein 2 42 136 IPR011422 -
Lal7g1249 485 MobiDBLite consensus disorder prediction 452 485 - -
Lal7g1249 485 Coils Coil 420 440 - -
Lal7g1249 485 ProSiteProfiles Zinc finger RING-type profile. 150 190 IPR001841 -
Lal7g1249 485 CDD RING-H2_BRAP2 148 191 - -
Lal7g1249 485 Coils Coil 354 395 - -
Lal7g1249 485 PANTHER BRCA1-ASSOCIATED PROTEIN 11 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1249 Lal-Chr7 18010666 18015234 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1249 134 355 C3H Transcription Factor Family AT2G39100 21.622 3.71e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1249 K10632 - gmx:100807397 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1249 7 18010666 18015234 Lal7g1249 7 18010666 18015234 ECH