Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1246 ATGGAGCTTCAACTAGGTCTTGCTCTTCCAACCCAACCTCTTAACCATAATTCATCACACTCTCACAATAAGAAACGTAGTTTCTCTAACCTCTTTCATCACCACACCTACAACAATACAGAATATGTTATGCTTCCCACTCTTTCGCTCCTCCCATTAACGCCTTCTCAATCAAGCAACCTTGTTGACCCGCTCAGCACCAAGAACGATGGAAATGATGTAGTGGGTTGGCCACCCGTGAATTCATATAGAAAGAAACTTCGTCACGACAACTATGGCGATGATGAAGCTGCAAGGAATTATAAAATGGTGTGGATTCATCATCAACCACATACCCATGTTTCAGTTGGTGCGAGAGAATGCAATAGCCTTTACGTGAAGGTGAAGATGGAGGGTGTTGGAATTGCAAGAAAGATTAATCTCACCAAGCATCATTCTTTTCAGACTCTTAAGGAAACCTTGATGGACATGTTTGGAAAATGTGGTCATCGACATTCAAAGTTATATGAATTGGCTTATCAGGACCAAGAAGGTGATTGGCTTCTTGCTGATGATGTGCCATGGAGAAATTTCATTGAGTGTGCAAAACAGCTCAAATTGGTGAAGAACATCAGATAA 618 0.4142 MELQLGLALPTQPLNHNSSHSHNKKRSFSNLFHHHTYNNTEYVMLPTLSLLPLTPSQSSNLVDPLSTKNDGNDVVGWPPVNSYRKKLRHDNYGDDEAARNYKMVWIHHQPHTHVSVGARECNSLYVKVKMEGVGIARKINLTKHHSFQTLKETLMDMFGKCGHRHSKLYELAYQDQEGDWLLADDVPWRNFIECAKQLKLVKNIR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1246 205 MobiDBLite consensus disorder prediction 1 25 - -
Lal7g1246 205 Pfam AUX/IAA family 20 160 IPR033389 -
Lal7g1246 205 Pfam AUX/IAA family 168 202 IPR033389 -
Lal7g1246 205 ProSiteProfiles PB1 domain profile. 123 205 IPR000270 GO:0005515
Lal7g1246 205 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 1 202 - -
Lal7g1246 205 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 202 IPR003311 GO:0005634|GO:0006355
Lal7g1246 205 SUPERFAMILY CAD & PB1 domains 120 200 - -
Lal7g1246 205 Gene3D - 118 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1246 Lal-Chr7 17992618 17993924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1246 125 205 B3 DNA Binding Superfamily AT1G19220 32.143 1.94e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal7g1246 AUX_IAA 3.7e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1246 K14484 - gmx:100808466 188.348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1246 7 17992618 17993924 Lal7g1246 7 17992618 17993924 ECH
Lal14g1816 14 17893476 17894727 Lal7g1246 7 17992618 17993924 LSH