Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1227 ATGTCAACGAACCATCAACCATTACTTTATTCTCAAAGATCCACTGTCAATTCATCGTCCCAGGTTGCCATCGTTGGCGCCAATGTTTCCCCTATTGAGAGCCTTGACTATGAAATTTTTGAGAACGAGTTCTTCAAACAAGATTGGAGGAGCAGAGGGAAGGTTCAGATATTTCAGTATATATTGGGGAAGTGGCTTTTGTGTTTAATCATTGGTTTGATCGTTAGTCTTATTGGGTTTTGCAACAATCTCGCTGTTGAAAATCTCGCTGGCATCAAGTTTGTCGTCACATCAAATATGATGTTGGAGAGGAGGTTTCTATTGGCATTTTTTGTCTTTTTCGCTTCAAATTTGAGTCTCACGCTATTTTCCTCTATAATCACGGCTCTGATAGCACCTACAGCGACTGGTTCAGGTATACCAGAGGTGAAAGCTTACCTGAATGGCGTAGATGCACCTGGAATATTTACTTTACGAACTTTGTTTGTTAAGATTATTGGAAGTATCACAGCTGTGTCATCATCTCTTCTCATTGGGAAGGCAGGGCCTATGGTGCATACAGGTGCATGTGTGGCATCATTGTTGGGTCAGGGTGGGTCAAAGAGATATGGGTTAACATGGAAATGGTTACGATTTTTTAAGAACGACCGAGATCGGCGAGATCTAATCATATGTGGATCTGCGGCTGGAATGGCTGCTGCTTTTCGTTCCCCTGTTGGTGGGGTGTTGTGGAGAAGTGCCCTTATGTGGAGAGCTTTCTTTACAGCTGCAACAGTTGCAATTATGCTTCGTGCCATGATTGATGTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATTCAGCAAGTATTTCATATCATATAGGGGATGTTCCTCCTGTGTTTGTTCTTGCCATTATAGGGGGTATACTTGGAAGCTTATATAATTTTTTGCTGAACAAAGTTCTTCGCATCTACAATTTCATCAACACGAAAGGAACCATTTACAAAATAGTTCTTGCTTGCTTAATCTCCATTATTACATCCTTTCTTCTTTTCGGATTGCCATGGTTCACATCCTGCCGACCTTGTCCTGCTGATGCAACTGAGCCCTGTCCTTCAATAGGTCGGTCTGGTAACTACAAAAAATTCCAATGCCCTCCTGATCACTACAATGATCTTGCCAGCCTCATTTTCAACACAAATGATGATGCTATCAGAAATCTACTCAGCAAGAACACCAATGATGAGTTTGAGTTTTCATCAATGCTCATCTTTTTCATGACATGCTTCTTTTTAAGTATCTTAAGCTATGGAGTTGTTGTCCCAGCCGGGCTTTTTGTGCCAGTTATTGTGACTGGTGCATCTTATGGACGCTTTGTTGGAATGTTGGTTGGGAAAAGGTCCAATCTTAACCATGGCCTTTATGCTGTGCTTGGTGCTGCTTCCTTTCTTGGCGGATCTATGAGATCGACAGTTTCACTGTGTGTAATTATTCTAGAACTTACCAATAACTTGTTATTGCTACCCTTAATCATGATGGTGCTTTTGGTATCTAAGACTGTAGCAGATGCTTTCAATGCAAATATATATGACCTTATAATGAAAGCCAAGGGGTTTCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTAACAGTAGGTGATGTAGTCATGGGACCACTTCAGATTTTCAATGGCTTCGAGAAGGTTCGTAACATAGTTTTTGTGCTCAAAACTACTGGACACAATGGGTTTCCTGTTACTGATGTACCTCCAGTTTCTGAAGCTCCAGTTTTATTTGGGATAATCCTTCGTAATCATCTTTTGGTGTTGTTAAAGAAGAAAGCTTTCCAGTGCACACCCACAGAAATAAGTAATGATGCCTTAAAAAAGTTTTCAGCTGAGGATTTTGCAAAGAAGGGTCCAAGCAAACGTGAAAAGATAGAAGATATACAGTTAACAGATGAAGAAATGGACATGTTCATAGATCTACATCCATTTACAAATGCTTCACCTTATACTGTTGTGGAGACGATGTCACTGGGAAAGGCCCTTACACTTTTTCGAGAAGTTGGTTTAAGGCACCTGCTTGTGGTACCCAAGATCTCCGGCAGATCACCTGTGGTGGGTATACTGACACGGCACGATTTCATGTCGGAACATATATTGGGTTTGTACCCTTTGCTGGTTAGAAGTAAGTGGAAAAGATTGAGATTCCAGCTCCCTTGTGTGTGA 2250 0.4102 MSTNHQPLLYSQRSTVNSSSQVAIVGANVSPIESLDYEIFENEFFKQDWRSRGKVQIFQYILGKWLLCLIIGLIVSLIGFCNNLAVENLAGIKFVVTSNMMLERRFLLAFFVFFASNLSLTLFSSIITALIAPTATGSGIPEVKAYLNGVDAPGIFTLRTLFVKIIGSITAVSSSLLIGKAGPMVHTGACVASLLGQGGSKRYGLTWKWLRFFKNDRDRRDLIICGSAAGMAAAFRSPVGGVLWRSALMWRAFFTAATVAIMLRAMIDVCLSGKCGLFGKGGLIMFDAYSASISYHIGDVPPVFVLAIIGGILGSLYNFLLNKVLRIYNFINTKGTIYKIVLACLISIITSFLLFGLPWFTSCRPCPADATEPCPSIGRSGNYKKFQCPPDHYNDLASLIFNTNDDAIRNLLSKNTNDEFEFSSMLIFFMTCFFLSILSYGVVVPAGLFVPVIVTGASYGRFVGMLVGKRSNLNHGLYAVLGAASFLGGSMRSTVSLCVIILELTNNLLLLPLIMMVLLVSKTVADAFNANIYDLIMKAKGFPYLETHAEPYMRQLTVGDVVMGPLQIFNGFEKVRNIVFVLKTTGHNGFPVTDVPPVSEAPVLFGIILRNHLLVLLKKKAFQCTPTEISNDALKKFSAEDFAKKGPSKREKIEDIQLTDEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFREVGLRHLLVVPKISGRSPVVGILTRHDFMSEHILGLYPLLVRSKWKRLRFQLPCV 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1227 749 Pfam Voltage gated chloride channel 121 526 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal7g1227 749 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 6 744 - -
Lal7g1227 749 SMART cbs_1 565 618 IPR000644 -
Lal7g1227 749 SMART cbs_1 676 727 IPR000644 -
Lal7g1227 749 PRINTS Chloride channel signature 133 150 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal7g1227 749 PRINTS Chloride channel signature 164 183 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal7g1227 749 PRINTS Chloride channel signature 228 247 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal7g1227 749 PRINTS Chloride channel signature 444 464 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal7g1227 749 PRINTS Chloride channel signature 476 492 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal7g1227 749 PRINTS Chloride channel signature 494 513 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal7g1227 749 PRINTS Chloride channel signature 532 546 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lal7g1227 749 PRINTS Plant CLC chloride channel signature 38 46 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lal7g1227 749 PRINTS Plant CLC chloride channel signature 254 264 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lal7g1227 749 PRINTS Plant CLC chloride channel signature 272 279 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lal7g1227 749 PRINTS Plant CLC chloride channel signature 396 412 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lal7g1227 749 SUPERFAMILY Clc chloride channel 42 547 IPR014743 -
Lal7g1227 749 Gene3D Clc chloride channel 56 545 - -
Lal7g1227 749 ProSiteProfiles CBS domain profile. 672 733 IPR000644 -
Lal7g1227 749 Gene3D - 546 726 IPR046342 -
Lal7g1227 749 Pfam CBS domain 676 724 IPR000644 -
Lal7g1227 749 PANTHER CHLORIDE CHANNEL PROTEIN 6 744 - -
Lal7g1227 749 CDD CBS_pair_voltage-gated_CLC_euk_bac 548 725 - -
Lal7g1227 749 SUPERFAMILY CBS-domain pair 548 724 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1227 Lal-Chr7 17888308 17893405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1227 7 747 Ion Channels AT5G33280 74.000 0.0 1116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1227 K05016 - gmx:100817901 1225.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1227 7 17888308 17893405 Lal7g1227 7 17888308 17893405 ECH