Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1208 ATGCGAATAGAACTATACGCTCTCTTCCGTGCGCATGTGAAAATCTGTGTGCGCGACAATCTCAGCGGTGAAAGCTTCAATTGCTTGTTGCAACACCCAAACCCACTTCAATCCCCAATTCACCACTTCCTCATTTTCCCTCTCAGTTTGTGGAGAATGGGAAGTAATGCTACTGAAAAGATCTATAGCGGCACCGAAAGCTCAGAACCCATTATTGAGATAAAGATAAAAACATTGGACTCACAAACTTACACCCTCAGAGTGGATAAACAGATGCCAGTTCCTGCTCTGAAAGAACAGATTGCGTCTGTAACTGGAGTGTTATCAGAGCAGCAGCGCTTAATTTGCCAAGGGAAAGTTCTAAAGGATGATCAACTCCTGTCTGCTTACCATGTTGAAGATGGTCATACCTTGCATCTGGTTGTCAGGCAACCTGGTTTACCACCGCCTGGAAGTTTATTGAATCATTCAGTGCCAGACCCACATTCAAGCACAAGCCATGGTCACAGCAATCAAATAGCCCCTGGTGTATTTGTTGAAACTTTCAACGTGCCTGTTCAAGGAGATGTAATTTCTCCTGAATTTCATAGGGTTGTTTCTGCTGTTCTAGGATCTATTGGAATTCCAATGAGTGGCAGTGATGGGATTGATGTGAGGGAGCAGGATTCTCAAGGCTTTGGAAGAGCTTCAGGTTCTAGTGGCATAACGGACTCATCTCACCCTCAATCGGAGGAACAACCTCGACCGCAGATTTTGTATGATAGATTGCAAAATATCTTTGGACCTCCTTCTGCGGGGTCTTTGCAGCCTCCTGTGTTTCCTGATTCTTTGACAACTTTGTCCCAATACCTGAGTCATATAAGCCATGAGTTTCATGCAATTGTCAGAGAAGGGGTGAACAATGGCCTAGCACAAGCAGCTGAAGCTCATAGGTCTGAAGAAATGGGATCCGTTTCTTCGGGGTTGGGTTCAACAACAGAAGGGCTTCCATCACCCGCATCCTTGGCAGAAGTTTTGCGTTCTAGTAGACAAATGATTGTTGAACAAGTTGGGGAGTGTCTACATCAACTTGCAAGCCAGCTGGAGAATCAAGCAAATGTAACTGATTCCTTGTTGCGGTCAAGCACTCAGTCTAGGACTATGAGGACCGGAGTTCTATTTTATAACCTTGGTGCATTTTTGCTTGAGCTTGGCCGCACAACCATGACAACACGTTTGGGTCAAGCAGCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCATCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCCGGAGCAAGCTTTGGTGCTGTCCCTGTTGGCACTACACAGTCCAACTCAAGTTTAGGTAGTGGTCTTGGATCGAGTTTTATCCCAAGGCGTATTGATATACATATACGGCGAGGTACATCAACAACCACACCCAATACCAATCAAGAAGAGCGCAGTGATACACAGTCTGCTTCAGTTCAACGAAATCAAGGTGAAAGTTCTGTTAATCTGTCAACCTCAAGGCGTCCAAATGCATCTATTGCTGGGGAGCCAGGAATAAGGGTGGTGCCAATTAGAACCATGGTTGCTGCCGTACCAGGTCCCATAAGTCGCTTGCCTTTAGAACAATCTGGTAATTCTATGGGGTTTTACTATCCAGTTATTGGGAGAATGCAACCTGTATCATCTGGGCGTGCAAATAGTGAACAGCGATCTCAACCACCAAGTCAGCATCGTGCTGCACAGCAATCAACTCTTGAATCCACATTGCAAAGGCAAAGTGTGGTTGATTCTGCAAGCAATGGTTCTGTGTCAACGCCTAGCACAAGGCAAGAGACATCAGACTCTCGTGTTGTGAATATAAATATTCTGTCTGCTGGTGGGCCCCAAAACAACCAAGAATCTGAGAGCCAGACACCAAGCAGTGCACTTCAGTTTTTAAGGGAACTCTTTCCTGATGGAGAAATTCATGTTGAGGATTCTAGTATACAAGGAACAGCTGCAGGTTCTACCTCAGAGCATGCTGCAACCTCAGGTGGTTCTTCCCATGTCCCTGAAGCAGAACCTAGAGCTAGCGATGAAGGAATATTTTTGTCTAATGTACTTCGTGAGATCATGCCCCTCATATCTCAACGAGCAGGGTCTGATGGAAATCCTTCAGTGGATCAAATGGCTCAAGATTCTTCTACCTTGGTTGAAACTGATGCTGGGACATCATCCGGAGAGAGTGGCTCTAAACAAGGCCTGCCAAATCCAAAACGTCAAAAGACTGAGAAGGCTTTCCTTAAGCAACCAAAAGTGTTTCTGAGCTCAAAGAAATCTGGAAAGGGAAAGAGGCCTGGAAAAGGTGGCAATCGCTTTTGGAAATCCATTGGTCTTGGATTTAAGACCCCTAAGGAAGCCATCGATGGAACCTATATTGACAAGAAGTGTCCCTTCACTGGCAATGTTTCTATCCGAGGTCGTATCTTATCAGGAATTTGTCACAGTGCTAAGATGAATAGAACAATTATTGTTAGGAGGAACTATCTTCATTTTATCAAGAAGTATCAAAGGTACGAGAAGAGGCATTCAAACATTCCTGCTCACGTATCGCCTTGCTTCCGTGTGAAGGAAGGAGACCATGTTATTATTGGCCAATGCAGACCAATCTCAAAGACAGTGAGGTTCAACGTGCTGAAAGTGATCCCAGCTGGCTCTTCTGGTGGTGCGAAGAAGGCATTTACCGGAGTATGA 2754 0.4524 MRIELYALFRAHVKICVRDNLSGESFNCLLQHPNPLQSPIHHFLIFPLSLWRMGSNATEKIYSGTESSEPIIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSEQQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPGLPPPGSLLNHSVPDPHSSTSHGHSNQIAPGVFVETFNVPVQGDVISPEFHRVVSAVLGSIGIPMSGSDGIDVREQDSQGFGRASGSSGITDSSHPQSEEQPRPQILYDRLQNIFGPPSAGSLQPPVFPDSLTTLSQYLSHISHEFHAIVREGVNNGLAQAAEAHRSEEMGSVSSGLGSTTEGLPSPASLAEVLRSSRQMIVEQVGECLHQLASQLENQANVTDSLLRSSTQSRTMRTGVLFYNLGAFLLELGRTTMTTRLGQAASEAVVNGGPAVFISPSGPNHIMVQPLPFQPGASFGAVPVGTTQSNSSLGSGLGSSFIPRRIDIHIRRGTSTTTPNTNQEERSDTQSASVQRNQGESSVNLSTSRRPNASIAGEPGIRVVPIRTMVAAVPGPISRLPLEQSGNSMGFYYPVIGRMQPVSSGRANSEQRSQPPSQHRAAQQSTLESTLQRQSVVDSASNGSVSTPSTRQETSDSRVVNINILSAGGPQNNQESESQTPSSALQFLRELFPDGEIHVEDSSIQGTAAGSTSEHAATSGGSSHVPEAEPRASDEGIFLSNVLREIMPLISQRAGSDGNPSVDQMAQDSSTLVETDAGTSSGESGSKQGLPNPKRQKTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPKEAIDGTYIDKKCPFTGNVSIRGRILSGICHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGSSGGAKKAFTGV 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1208 917 MobiDBLite consensus disorder prediction 475 521 - -
Lal7g1208 917 MobiDBLite consensus disorder prediction 719 757 - -
Lal7g1208 917 MobiDBLite consensus disorder prediction 225 246 - -
Lal7g1208 917 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 53 764 - -
Lal7g1208 917 ProSiteProfiles Ubiquitin domain profile. 72 147 IPR000626 GO:0005515
Lal7g1208 917 MobiDBLite consensus disorder prediction 670 685 - -
Lal7g1208 917 SMART ubq_7 72 143 IPR000626 GO:0005515
Lal7g1208 917 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 53 764 - -
Lal7g1208 917 SUPERFAMILY Nucleic acid-binding proteins 826 905 IPR012340 -
Lal7g1208 917 MobiDBLite consensus disorder prediction 317 331 - -
Lal7g1208 917 MobiDBLite consensus disorder prediction 213 247 - -
Lal7g1208 917 MobiDBLite consensus disorder prediction 670 698 - -
Lal7g1208 917 MobiDBLite consensus disorder prediction 567 623 - -
Lal7g1208 917 TIGRFAM uS17_arch: ribosomal protein uS17 801 901 IPR028333 -
Lal7g1208 917 MobiDBLite consensus disorder prediction 308 331 - -
Lal7g1208 917 MobiDBLite consensus disorder prediction 717 791 - -
Lal7g1208 917 ProSitePatterns Ribosomal protein S17 signature. 879 891 IPR019979 GO:0003735|GO:0005840|GO:0006412
Lal7g1208 917 Gene3D - 756 916 - -
Lal7g1208 917 PRINTS Ribosomal protein S17 family signature 846 869 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal7g1208 917 PRINTS Ribosomal protein S17 family signature 879 889 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal7g1208 917 PRINTS Ribosomal protein S17 family signature 889 896 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal7g1208 917 Pfam Ribosomal_S17 N-terminal 762 830 IPR032440 -
Lal7g1208 917 Pfam Ubiquitin family 74 144 IPR000626 GO:0005515
Lal7g1208 917 Gene3D - 66 152 - -
Lal7g1208 917 MobiDBLite consensus disorder prediction 477 518 - -
Lal7g1208 917 Pfam Ribosomal protein S17 832 900 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lal7g1208 917 MobiDBLite consensus disorder prediction 149 170 - -
Lal7g1208 917 SUPERFAMILY Ubiquitin-like 65 148 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1208 Lal-Chr7 17757780 17770689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1208 761 917 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 89.172 4.17e-88 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1208 K23390 - gmx:100783070 1013.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1208 7 17757780 17770689 Lal7g1208 7 17757780 17770689 ECH
Lal14g1796 14 17707477 17719789 Lal7g1208 7 17757780 17770689 LSH
Lal7g1208 7 17757780 17770689 Lal19g1342 19 16296710 16298812 LSH