Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1205 ATGGGTTCAGGTTCTAGTAGACTTGGGTCTCCTCAATCATCTGAAAGGTTCAACCACACCCCTCGTTTTACAACTTCCTCTTTTCTCCGCGGTTCTTCTACCTATCAGGTGGAAGAACATCCATCTGAACCTCAGATAGATTCAGCAATGGAATTTGATAATGAAATGTATAAAGTCAGTGAGGAATCATCTTTATTGTGTACAGAAGCTAGAATTAGCCACAGCTCGCATGCTGAAACTGCCACCTCATCTGATGCCAGAACTGAGTTCTATGGAAACGCTACTGTTGAAGGTTCTTCCAGAAATGTTGCAGCAACTAGTCAGACGAAGTGTTTATCTGAATTCGAGGAGCTAGTCCCACCTTATCAGGTAAGTGCTGGTCATAATCACCATGAATCATATAGGGATATTAGCAATACAGCTAGTACTTCATTTGTAGAACAGCAATCTTCAGATCCAGTCTCTGTGAATGTTTCTTCTAACGAAGATGTAGTCAATGCTGTTGATCATCCAGTGGTTAGTGGTGGCTCTCAAATCTCTCGTGAGACAGTGCATCCAAGGAATTCCACCCCTCAAGAGCATGGAAATTCAAGTTCTGGTGATATCTCTGTAGAGAATCACACCGATGCATTCATAGCTACCCATGATTCTTCCAGTTCTGTTGCTCAAGCTTCAAACTTACCAGAAAATTCTCAATTACCAGAAGAAGAATCACGTCAGGAGACGATCCCTTCAGGTTTAGGTATTCTTGTGTCCAATCGGGATAGAGGGCATGGAAGTGATGGTGTGCTTCAAGTTGATGTGGTCGCAATATCTTCCAGCATGTTGTCTGGCAGCAATGCTGATGCCAATGATCATGATGTCAGAAGGAGTGGTAGAAGATTATTTTGGGATGCCTTTTCACGACGTAGTTCTAGAGGGCTTGGTGATTCTATGACAATGATCTTCTCTGCCGGTGGTGCCGATGATCCAGAATCTCGGGATCGATGGCTTGTTGATTTTGGTGGTGATTTCTCAAATAATAGGGTTCGAGGTTCTTCTGGCTATATGGGCAGTAGAATTCACAGATTGAATGGACGAATGCGGCACTCAAGATCTGAGATATGGGAAAGGCTTCGTGGTGGCCTTGATGAGATTGGTCAGTTAAATTCTTCCTGCCCACTAGGACTCCATGCAGATGGTATGTGCTCATGTGACTCTTCCCCAATAGCTGAGGAATCTAGCACTCGAGCAAGTATTTATAGAATAGTCATGCTAGCAGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTATCACTTTCCCTATCCATGGTCTCACTCCCTGCACCTGAATCAATTGTCGACTCTTTCCCTCTGAAGTCTCACAAAAAGGTTGATGCAGCTAATGGTAGCAATGACACTGAACAATGTTACATATGCCTGGCGGAGTACGAAGAAGGGGACCAAATACGAGTTCTTCCTTGCAACCATGAATATCACATGATGTGTGTTGATAAGTGGCTTAAAGAAATACATGGCGTATGTCCTCTTTGTCGTAGCAATGTTTGTGGAGGATTAACGGAGTCTGCTGCCGACTCAGAAATGCCATCTCATTGA 1608 0.4378 MGSGSSRLGSPQSSERFNHTPRFTTSSFLRGSSTYQVEEHPSEPQIDSAMEFDNEMYKVSEESSLLCTEARISHSSHAETATSSDARTEFYGNATVEGSSRNVAATSQTKCLSEFEELVPPYQVSAGHNHHESYRDISNTASTSFVEQQSSDPVSVNVSSNEDVVNAVDHPVVSGGSQISRETVHPRNSTPQEHGNSSSGDISVENHTDAFIATHDSSSSVAQASNLPENSQLPEEESRQETIPSGLGILVSNRDRGHGSDGVLQVDVVAISSSMLSGSNADANDHDVRRSGRRLFWDAFSRRSSRGLGDSMTMIFSAGGADDPESRDRWLVDFGGDFSNNRVRGSSGYMGSRIHRLNGRMRHSRSEIWERLRGGLDEIGQLNSSCPLGLHADGMCSCDSSPIAEESSTRASIYRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESIVDSFPLKSHKKVDAANGSNDTEQCYICLAEYEEGDQIRVLPCNHEYHMMCVDKWLKEIHGVCPLCRSNVCGGLTESAADSEMPSH 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1205 535 Pfam Ring finger domain 473 516 IPR001841 -
Lal7g1205 535 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 533 - -
Lal7g1205 535 MobiDBLite consensus disorder prediction 172 203 - -
Lal7g1205 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 520 IPR013083 -
Lal7g1205 535 SUPERFAMILY RING/U-box 466 519 - -
Lal7g1205 535 MobiDBLite consensus disorder prediction 217 242 - -
Lal7g1205 535 MobiDBLite consensus disorder prediction 1 41 - -
Lal7g1205 535 MobiDBLite consensus disorder prediction 176 203 - -
Lal7g1205 535 SMART ring_2 474 515 IPR001841 -
Lal7g1205 535 MobiDBLite consensus disorder prediction 217 239 - -
Lal7g1205 535 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 533 - -
Lal7g1205 535 CDD mRING-H2-C3H2C2D_ZSWM2 473 516 - -
Lal7g1205 535 MobiDBLite consensus disorder prediction 1 44 - -
Lal7g1205 535 ProSiteProfiles Zinc finger RING-type profile. 474 516 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1205 Lal-Chr7 17743264 17747176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1205 383 520 C3H Transcription Factor Family AT5G45290 52.288 6.23e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1205 - - gmx:100783604 754.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1205 7 17743264 17747176 Lal7g1205 7 17743264 17747176 ECH
Lal7g1205 7 17743264 17747176 Lal19g1341 19 16288007 16294465 LSH