Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1133 ATGGGTAGAGCTCCATGCTGTGACAAAGCCAATGTTAAGAAAGGACCTTGGTCTCCTCAAGAGGATGCTGCACTCAAAGACTACATTGAAAAAAATGGAACTGGAGGAAATTGGATTGCTCTTCCTCAGAAAATAGGGATGAAGAGATGTGGAAAGAGTTGCAGGCTTAGGTGGTTGAATTACTTGAGGCCTAATATCAAGCATGGTGGATTTACTGAAGAAGAAGACAACCTCATCTGCGGTCTTTACATTAGCATTGGTAGCAGATGGTCCATTATTGCAGCACAACTACATGGAAGGACAGACAACGACATCAAGAACTATTGGAACACAAGATTGAAGAAGAAACTGTTGGGAAGGCGCAAACAATCTAACTTTAACAGAAAAGAAACAAACGGGATAGATGATATTTCATCAAATTCCCTAAGCAGTTCTGCTCTTGAAAGGCTTCAACTGCATATGCAACTTCAAAGCCTTCAAAACCCTTTCTCTTTCTACAGTAATCCATCCCTGTGGCCTAAGTTGCATCATTCCCAAGAAAAGATGATTCAGCAATCTTTGAAAGATTCCTCTAACTCTAACACTGTTGGGATGCAAGAACAAAAAGATGAGTTTGACAAACCAACTAATATTGTTAGTGGTTTTCTTCAACAAGATATTGGCGCAAATATGAATACCCCGACGGTTGAGAATCCTTTGAACAACAATTCAGTTCCCTTTGCTAATTCTGGGAATAATATTCCAATGCACTCATCAAGTATCGTTGAGCAAACTAATAATATGGGATTTCAGCAAGTTTGTGCATTGCAAATAATTGAAAATGATAACATTTTCAACAACAAAATTACATTGAGTAATTACTTGTCACAGGAAGAACAGAATATGGCTAGATTTGATTGTTTCAGAGAGTTGAATGGTTCAAATGACAATAGCAACTTGATTTTGTGGTCCAATGATTCTGATTCAAAGTCAGCATCAACAAGCTCTTGGGATTCATCAAATACTCCAGTTCTTATGACAGAAGGAATGTTCCAAGATTATGAACTAGGTTACATTTTCTAG 1062 0.3785 MGRAPCCDKANVKKGPWSPQEDAALKDYIEKNGTGGNWIALPQKIGMKRCGKSCRLRWLNYLRPNIKHGGFTEEEDNLICGLYISIGSRWSIIAAQLHGRTDNDIKNYWNTRLKKKLLGRRKQSNFNRKETNGIDDISSNSLSSSALERLQLHMQLQSLQNPFSFYSNPSLWPKLHHSQEKMIQQSLKDSSNSNTVGMQEQKDEFDKPTNIVSGFLQQDIGANMNTPTVENPLNNNSVPFANSGNNIPMHSSSIVEQTNNMGFQQVCALQIIENDNIFNNKITLSNYLSQEEQNMARFDCFRELNGSNDNSNLILWSNDSDSKSASTSSWDSSNTPVLMTEGMFQDYELGYIF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1133 353 CDD SANT 71 113 IPR001005 -
Lal7g1133 353 Gene3D - 7 68 - -
Lal7g1133 353 SMART sant 13 64 IPR001005 -
Lal7g1133 353 SMART sant 67 115 IPR001005 -
Lal7g1133 353 Gene3D - 70 136 - -
Lal7g1133 353 PANTHER OS09G0431300 PROTEIN 1 282 - -
Lal7g1133 353 CDD SANT 16 62 IPR001005 -
Lal7g1133 353 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lal7g1133 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lal7g1133 353 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal7g1133 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lal7g1133 353 PANTHER OS09G0431300 PROTEIN 1 282 - -
Lal7g1133 353 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lal7g1133 353 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lal7g1133 353 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1133 Lal-Chr7 17224118 17226053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1133 1 176 MYB Transcription Factor Family AT5G57620 76.757 2.16e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal7g1133 Myb_DNA-binding 1.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1133 K09422 - gmx:778083 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1133 7 17224118 17226053 Lal7g1133 7 17224118 17226053 ECH
Lal14g1730 14 17329911 17331612 Lal7g1133 7 17224118 17226053 LSH
Lal7g1133 7 17224118 17226053 Lal19g1276 19 15894435 15896309 LSH