Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1129 ATGAACTTCCATCACCCTAATACTTCTCTTCACCTAAGGCAACCTGATGAGAACAATCCACTCAATCTAGATCTTCTCCTTCACCCTTCTTCCTCTTCTTCATCATCAACTCCTACTAGTGCAATGGAACTTAGGATATTCTCATGCAACTATTGTCAGAGAAAGTTTTACAGTTCACAAGCTTTGGGAGGCCACCAAAATGCTCATAAGCTGGAAAGGACTCTAGCCAAGAAAAGTAGGGAACTGGGTTCAGCCATGCATGCTTATAGAGGAGGACAAGAACAAAGACCAAACTTCAGTGCTAATTCACACCAACAACACCATCTTGGTCGTGCTCTCATGGTCATGGAAAACCAAGGACAAGGTATGAGGAGAGAGTTTAGCTATGGTTCCAAAGAAGGGGTGCCTTCTTGGTCACGTGGCTATACTAATGAAAATAATGTTCAAGAAGATGTTAGCCAACTTGACTTATCTTTAAGGCTTTGA 486 0.4218 MNFHHPNTSLHLRQPDENNPLNLDLLLHPSSSSSSSTPTSAMELRIFSCNYCQRKFYSSQALGGHQNAHKLERTLAKKSRELGSAMHAYRGGQEQRPNFSANSHQQHHLGRALMVMENQGQGMRREFSYGSKEGVPSWSRGYTNENNVQEDVSQLDLSLRL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1129 161 Gene3D Classic Zinc Finger 30 132 - -
Lal7g1129 161 PANTHER BNAC02G44440D PROTEIN 5 161 - -
Lal7g1129 161 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Lal7g1129 161 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Lal7g1129 161 SUPERFAMILY beta-beta-alpha zinc fingers 45 74 IPR036236 -
Lal7g1129 161 PANTHER ZINC FINGER PROTEIN JAGGED 5 161 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1129 Lal-Chr7 17197192 17197677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1129 4 82 C2H2 Transcription Factor Family AT5G57520 67.059 6.06e-26 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal7g1129 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1129 - - gmx:100778014 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1129 7 17197192 17197677 Lal7g1129 7 17197192 17197677 ECH
Lal14g1721 14 17276365 17277648 Lal7g1129 7 17197192 17197677 LSH