Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1116 ATGGACTCATCAACTAACTCTTCTTCACCTCTTAATACCAACTTCAACAACACCTCTCTCGGCTTTTCTCTTTCCAACCACTTTCCTAACCATTCCTCTCACCTTTCCCTTTTCCACTCGTTCTCTTATCCAACCCCCACACCTCTTACACTCTCACCAAGAAATAATGTGGAAGCACCGCCAGAGGTAACAACAACTGTTGGAAGCGTTGGAGAAGCAACTAACCTTTCTATATTCATTAGTGGACCTAAGTTTGAGGACTTTCTGGGATGCTCCACCACCGCCACAGGTGCAAGTACTGCACCCTCACAGCTTCACCAGTTCTCAACTGAAACCGACTTATACGATTCTGAACTCAACACAACCATAGCCGCTTGCTTCCCTCGCGGCTTCGGCGCCGCCGAACCAACCACCGTGCCTCAGAAGCCCTCCCCAAAGAAAACCGCTGAAACCTTTGGCCAACGCACCTCCATATACCGTGGCGTCACCCGACATAGATGGACTGGGAGATATGAAGCTCATCTATGGGATAATAGCTGCAGAAGGGAAGGGCAAAGTAGGAAAGGAAGACAAGGTGGTTATGATAAGGAAGAAAAGGCAGCAAGAGCATATGATCTCGCAGCTCTCAAGTACTGGGGTCCAACCACAACCACTAACTTCCCTATCTCAAACTATGAGAAGGAAGTGGAGGACATGAAGAACATGACCAGACAAGAGTTTGTTGCATCTCTAAGAAGGAAGAGCAGTGGTTTCTCCAGAGGAGCCTCTATATACAGAGGTGTGACAAGGCACCACCAGCATGGCCGGTGGCAGGCAAGAATAGGTAGAGTTGCAGGAAACAAAGACCTCTACCTTGGCACTTTCAGTACCCAAGAAGAAGCTGCAGAGGCCTATGACATTGCAGCTATAAAATTCAGAGGACTAAATGCAGTGACTAACTTTGACATGAGTCGCTATGATGTGAAGAACATTGCAAATAGCACCCTTCCAATTGGTGGTTTATCAAGCAAGAACAAAAACTCCTCAGACTCTGTATCTGATCAGAGCAAAAGCCATTCAGATGAGAAAGATCCATCAAATTCAACTTCATCAGTATCCTTTGCATCACAACAGCATCAACTACAATCAAATTCCACTCTCAGCTTTGCCATTCCCATCAAGCAAGACCCTTCCGATTATTGGTCGATCCTCGGGTACCATAATAACACTACTAGTGTTACTACTACACCAACTTCTTTTGCATCTTCCAACAATGCCACACCATTCCACATGGACTTCTCTGTTGCCCCTTCAAATGATACTAACAATGCAGCTTCATTTTTAAATGATTCAAGTGGAAGCATCTTTGTTCAGAATCAGAAACAATGTGGTGGTTCAAATAATTCAAGTTCAATCCCATTGGCCGCACCCGTGTTTTCTTTAAATAGTAATAGTGGTTATGAGAATTCTTCTGCTGGTTATGGAAACTGGATTGGACCAACCCTGCACACATTCCAAACCCATGCAAAACCAAGTCTTTTTCATACCCCAATATTTGGAATGGAATGA 1548 0.4483 MDSSTNSSSPLNTNFNNTSLGFSLSNHFPNHSSHLSLFHSFSYPTPTPLTLSPRNNVEAPPEVTTTVGSVGEATNLSIFISGPKFEDFLGCSTTATGASTAPSQLHQFSTETDLYDSELNTTIAACFPRGFGAAEPTTVPQKPSPKKTAETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYEKEVEDMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKNIANSTLPIGGLSSKNKNSSDSVSDQSKSHSDEKDPSNSTSSVSFASQQHQLQSNSTLSFAIPIKQDPSDYWSILGYHNNTTSVTTTPTSFASSNNATPFHMDFSVAPSNDTNNAASFLNDSSGSIFVQNQKQCGGSNNSSSIPLAAPVFSLNSNSGYENSSAGYGNWIGPTLHTFQTHAKPSLFHTPIFGME 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1116 515 Pfam AP2 domain 257 307 IPR001471 GO:0003700|GO:0006355
Lal7g1116 515 Pfam AP2 domain 158 213 IPR001471 GO:0003700|GO:0006355
Lal7g1116 515 SUPERFAMILY DNA-binding domain 157 223 IPR016177 GO:0003677
Lal7g1116 515 CDD AP2 256 317 IPR001471 GO:0003700|GO:0006355
Lal7g1116 515 Gene3D AP2/ERF domain 158 223 IPR036955 GO:0003700|GO:0006355
Lal7g1116 515 Gene3D AP2/ERF domain 257 317 IPR036955 GO:0003700|GO:0006355
Lal7g1116 515 ProSiteProfiles AP2/ERF domain profile. 158 221 IPR001471 GO:0003700|GO:0006355
Lal7g1116 515 SUPERFAMILY DNA-binding domain 256 317 IPR016177 GO:0003677
Lal7g1116 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 141 440 - -
Lal7g1116 515 CDD AP2 157 223 IPR001471 GO:0003700|GO:0006355
Lal7g1116 515 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Lal7g1116 515 PRINTS Ethylene responsive element binding protein signature 297 317 IPR001471 GO:0003700|GO:0006355
Lal7g1116 515 MobiDBLite consensus disorder prediction 330 370 - -
Lal7g1116 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 141 440 - -
Lal7g1116 515 MobiDBLite consensus disorder prediction 330 347 - -
Lal7g1116 515 SMART rav1_2 158 227 IPR001471 GO:0003700|GO:0006355
Lal7g1116 515 SMART rav1_2 257 321 IPR001471 GO:0003700|GO:0006355
Lal7g1116 515 ProSiteProfiles AP2/ERF domain profile. 257 315 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1116 Lal-Chr7 17116176 17120021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1116 113 515 AP2-EREBP Transcription Factor Family AT5G57390 56.604 5.58e-145 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lal7g1116 AP2 9.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1116 K09285 - gmx:100797828 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1116 7 17116176 17120021 Lal7g1116 7 17116176 17120021 ECH
Lal7g1116 7 17116176 17120021 Lal19g1256 19 15759424 15763264 LSH