Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1100 ATGCATATGCTAAAATCAAAGTCTCACACACACAAAGTTGACACAAACATCCCAAGGAAGAAAGTTACTGACTCTTCCATCAAGAGGCCAAGCAAGGTGTCTTCAACTAAGAAATTAATTATTAAACAAAGTTCACATAAAGCAGATGGAAAATTTCCACAGAATATGTCCTCAAATCTACAACGCAAAAAAGTTAGGGAAAAAGAGAAAGATGATGGGGAGGTAAAGCTTCAAAAAAGAAAGAGAAGGAGAAAAAAGAAAAGGCAAAGGAATAATGTGAATCTTGACGATGCTTCACGTCTGCAGCGGAGAACTAGGTATCTCATAATCAAAATGAAGCTAGAGCAAAACCTTATTGATGCTTACTCTGCAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGTTACAAAGAGCACAGAAGCAGATTTTAAAATGTAAACTTGGTATTCGTGATGCTATTCGCCAGTTGGATTCTCTGAGCGGCATAGAAGAGCCGGTCATTGCTCCAGATGGATCTGCTAACCATAAACATATATTCTGTGCAAAGTGCAAGTTACGTGAAGCTCTTCCAGACAATGATATTGTACTATGTCATGGTAGATGCAGTCGTGCTTTTCATCAAAGATGTCTCGATCCTCCTTTAGACTCTGAAGATGTTCCTCCTGGAGGCCAGGGCTGGTTTTGCAAGTTTTGTGACTGTAAGATGAGAATACTGGAGGCAGTGAATGCACATCTTGGAACTCACTTCTCCTTGCACAGTACTTCACAGGATGTATTCAAGGAAGAGGCTGCTATGCCCGATGGCGATACTGCATTACTGAATCCCGGTGAAGAATTGCCATCGGATGATTCTGAAGATGAAGATTATAATCCAGAGAGGAGAGAAGGCGACCACGACATCAACACAGAAGGAACTGATGATTTCAGTAGTTCTGCGAGTCTGTGGTCTTACGACAGTGAATGTTCTCCAGTTGATGAAGGTGTCAACCATGAGTTTTTTTCTGTCAATAGCTGCATAGATTCTGATGAATCCGAAGGAAAAGCCTATGGCCGTAGGCATAGGAAAGCTGTTGACTACAAGAAACTTTATGATGCCTTCATTTTCCCAATCTTTCAAGCACAAGTGTTGCTGTTTCTCATTGAAAAGGAAATGTTTGGGAAGGATGCTCCTGCATATGAACAATTGAGTGAGGATGAAGACTGGGGTCCTAGCAAAAGAAAGCGGAGAGAAAAGGAGTCTGATGCTGTTAATACTCTGATGACTTTGCATGAAAGTGAGAACAAACATCCCAGCAATGAGCACCGTGGGATGATAAGAGATGATTCTTCAGGTATACAAATCAGAAAGCCTTGTTTTAGGTTTCCACCCGATGCGATTGAGAAGCTACGCCAAGTATTTGCGGAGAATGAACTTCCTCCAAGATCGGTGAAGGTGGATATTTCAAAAGAGTTTGGACTTAATGTTGAGAAGGTTGTCACTTGCTGTCCTCCAACTGTATCTTCTTTCTATCTTCATCTGACTGTTAGCAAATGGTTCAAAAATGCACGTTACGTAGCACTTAAAGCCAGAAAGCAGCTACAAGAAGGAACAGATCAGCTTCAAAGTTCCACTCCTAGGAAGAACTCTACATTACAAAATATGGGAGAAGCTGAACTTTTGAAATCAAAGGCCTCAAAAATTACTGTGAACAATTCCGCAAAGAATGTAAAAAATGTCACTAGTAAAATGAAGACAAAGTCAGATAGCAATACTTTGAGGAAAAGACAACCAGAAATGTTTTCACCTCAGCCAAGTGAAAATGACTTTATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTATTGAAGGAAAGAAAGAGGAAGGCAAAGTTTACATTTGAAGGAGGTTATCAGGAAGCAGAGTTGGAATTTGAAAGACTGAGCAAATTGAAGATTAAACTTGATAGTATGAAGCAAAAGTTAAATGCAATTCAAAATTACAGAGGAAAGGGTTCTGATGAACCTCAGTTGAATGAGCCATCTACTATATTTGTACCCATAGCTGTGTTGAGGGAAAAGGTTGAATTATAA 2088 0.4004 MHMLKSKSHTHKVDTNIPRKKVTDSSIKRPSKVSSTKKLIIKQSSHKADGKFPQNMSSNLQRKKVREKEKDDGEVKLQKRKRRRKKKRQRNNVNLDDASRLQRRTRYLIIKMKLEQNLIDAYSAEGWKGQSREKIRPEKELQRAQKQILKCKLGIRDAIRQLDSLSGIEEPVIAPDGSANHKHIFCAKCKLREALPDNDIVLCHGRCSRAFHQRCLDPPLDSEDVPPGGQGWFCKFCDCKMRILEAVNAHLGTHFSLHSTSQDVFKEEAAMPDGDTALLNPGEELPSDDSEDEDYNPERREGDHDINTEGTDDFSSSASLWSYDSECSPVDEGVNHEFFSVNSCIDSDESEGKAYGRRHRKAVDYKKLYDAFIFPIFQAQVLLFLIEKEMFGKDAPAYEQLSEDEDWGPSKRKRREKESDAVNTLMTLHESENKHPSNEHRGMIRDDSSGIQIRKPCFRFPPDAIEKLRQVFAENELPPRSVKVDISKEFGLNVEKVVTCCPPTVSSFYLHLTVSKWFKNARYVALKARKQLQEGTDQLQSSTPRKNSTLQNMGEAELLKSKASKITVNNSAKNVKNVTSKMKTKSDSNTLRKRQPEMFSPQPSENDFMEISDDVSLKKLLKERKRKAKFTFEGGYQEAELEFERLSKLKIKLDSMKQKLNAIQNYRGKGSDEPQLNEPSTIFVPIAVLREKVEL 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1100 695 MobiDBLite consensus disorder prediction 579 605 - -
Lal7g1100 695 SMART PHD_3 185 238 IPR001965 -
Lal7g1100 695 CDD PHD_PRHA_like 185 237 IPR045876 -
Lal7g1100 695 SMART HOX_1 453 532 IPR001356 GO:0003677
Lal7g1100 695 CDD homeodomain 459 531 IPR001356 GO:0003677
Lal7g1100 695 Coils Coil 686 695 - -
Lal7g1100 695 MobiDBLite consensus disorder prediction 61 78 - -
Lal7g1100 695 MobiDBLite consensus disorder prediction 8 27 - -
Lal7g1100 695 ProSiteProfiles Zinc finger PHD-type profile. 183 240 IPR019787 -
Lal7g1100 695 Gene3D - 453 537 - -
Lal7g1100 695 PANTHER POLYCOMB PROTEIN PCL 23 669 - -
Lal7g1100 695 MobiDBLite consensus disorder prediction 400 420 - -
Lal7g1100 695 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 249 IPR013083 -
Lal7g1100 695 Coils Coil 646 666 - -
Lal7g1100 695 ProSitePatterns Zinc finger PHD-type signature. 186 237 IPR019786 -
Lal7g1100 695 SUPERFAMILY Homeodomain-like 451 530 IPR009057 -
Lal7g1100 695 MobiDBLite consensus disorder prediction 533 552 - -
Lal7g1100 695 MobiDBLite consensus disorder prediction 273 317 - -
Lal7g1100 695 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 23 669 - -
Lal7g1100 695 Pfam PHD-finger 185 240 IPR019787 -
Lal7g1100 695 SUPERFAMILY FYVE/PHD zinc finger 180 242 IPR011011 -
Lal7g1100 695 MobiDBLite consensus disorder prediction 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1100 Lal-Chr7 16985239 16991423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1100 91 530 Homeobox Transcription Factor Family AT4G29940 49.455 5.39e-130 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal7g1100 PHD 1.5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1100 - - gmx:100817639 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1100 7 16985239 16991423 Lal7g1100 7 16985239 16991423 ECH
Lal7g1100 7 16985239 16991423 Lal4g1560 4 19791663 19797379 PCT
Lal4g1560 4 19791663 19797379 Lal7g1100 7 16985239 16991423 PCT