Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1096 ATGGAAAATTTTGGAGACGAATATAAGCATTACTGGGAGACCAACATGTTCCTCCAAACTGAAGAGCTTGACAGCTGGGGATTGGATGAAGCCTTATATGGGTACTACGATTCAAGCTCACCGGACGGTGGTACTTCGTCGGCGCCATCAAAGAACATTGCCTCCGAGAGGAATAGGAGGAAGAAACTCAATGATAGGCTTTTTGCACTTAGAGCTGTGGTCCCAAATATTAGCAAGATGGATAAGATTTCAATACTTAAGGATGCTACTGAGTACATCCAACAGTTGCATGAGCAAGAGAAGAGCATGAAAGGTGAGATAATGGAGCTTGAATCTAGGAAATTGAAAAACCCTAGCAGTGATTTTGAGCAAGAGATGCCTTTTATGGTGAAGTCTAAGAAGATGAAAACTGAGAACATATTGGATTATGTCACTTCAACATCCCCAATTGAACTCATTGAGGGTGATGAAGAAGAGAAAGATGTTTTGCAGAAAAAAATTCATAATGCCATTTCAGCTCATAATAATCCTCATCTCATAGCCCAAGGACAACACCTCTTCGCTTTCCTCCTCTCTTCTCAACCCAAATCTTCTTCTTCTTCTTCTTCGACCCTTCAGTCCTTACCTCAACCTTCAACCAACCCTTCATCCAATTCAGGAAAAAGTTCTTCCCTTTTCTCTAACCTCCCTAATCCTAAATCCCAAATCCATGACCAACAACCCAGAAAGGTTGTGCAATTCAGACCCCCCGTTATCTCTTTGCCTAAACCAACCGAACTCGAGGATGACATCGAAGAGGAGCAAGAGCGAAATCGAAGAAGAAATACCCATAATTCGATTCAAGCACCATCTGTGAAGTCATTCTTGTCCACCATTCCTGCACCCAGGAACTCTGCCACTCTCGGTGTTCAATCAAGTTCCGTTGATCAAAATGCAGGGGATTATGTGAATTATGAGAATTACCCTAATTACCAATATGCCACTGACCCAAATGCAGGGTCAGGGTTTTCTAGTTATGGCAATTATGATTCAGGTGTTGATCGAAGTATTGGGGCTGACAGTGCTAGTTATGGAAATCATGATGTGGCTGTTGATCAAAGCGTGGAAGCTGGCAGCGCCGAGGAATTTATGAATTATGCAAATTACCCTGGTTATGGCTATGCAAGCTATAGTGACTATGGTGATAATGTTCAATATGGGAATAACTGGGTTAATGGGTTGCCAGAGGCGTCTGGGGTTAGTGACAATGCTGTTAAGTTTCCTGGGAAGAAGAGAGGCAGGCATGAGATTCCCATTGAAGTGATTGAGGTGAAGCAAGAAGAATTGATTAAGAATCGACCGAGAGAGGATCAGCCTGTTTCTGCAAAGGGGAAGCCTTCAAAGCTGCAGAAGAGGAAGCATCAGATTAGTTCTTTATACTTCGACATGAAACAAAATGAAATGCAACTAGCAGAGCGTCGTGCAAAGGGCATGCTTACCAAAGCTGAAACACAGGCGAAATACGGATGGTAA 1512 0.4286 MENFGDEYKHYWETNMFLQTEELDSWGLDEALYGYYDSSSPDGGTSSAPSKNIASERNRRKKLNDRLFALRAVVPNISKMDKISILKDATEYIQQLHEQEKSMKGEIMELESRKLKNPSSDFEQEMPFMVKSKKMKTENILDYVTSTSPIELIEGDEEEKDVLQKKIHNAISAHNNPHLIAQGQHLFAFLLSSQPKSSSSSSSTLQSLPQPSTNPSSNSGKSSSLFSNLPNPKSQIHDQQPRKVVQFRPPVISLPKPTELEDDIEEEQERNRRRNTHNSIQAPSVKSFLSTIPAPRNSATLGVQSSSVDQNAGDYVNYENYPNYQYATDPNAGSGFSSYGNYDSGVDRSIGADSASYGNHDVAVDQSVEAGSAEEFMNYANYPGYGYASYSDYGDNVQYGNNWVNGLPEASGVSDNAVKFPGKKRGRHEIPIEVIEVKQEELIKNRPREDQPVSAKGKPSKLQKRKHQISSLYFDMKQNEMQLAERRAKGMLTKAETQAKYGW 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1096 503 MobiDBLite consensus disorder prediction 443 467 - -
Lal7g1096 503 MobiDBLite consensus disorder prediction 198 285 - -
Lal7g1096 503 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
Lal7g1096 503 SMART finulus 53 102 IPR011598 GO:0046983
Lal7g1096 503 Coils Coil 93 113 - -
Lal7g1096 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 112 IPR036638 GO:0046983
Lal7g1096 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Lal7g1096 503 Pfam Mitotic checkpoint regulator, MAD2B-interacting 224 503 IPR018800 -
Lal7g1096 503 MobiDBLite consensus disorder prediction 198 241 - -
Lal7g1096 503 Gene3D - 45 114 IPR036638 GO:0046983
Lal7g1096 503 PANTHER PROLINE-RICH PROTEIN PRCC 166 503 IPR018800 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1096 Lal-Chr7 16938020 16943402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1096 1 154 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 56.604 2.22e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal7g1096 PRCC 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1096 K13105 - gmx:100805518 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1096 7 16938020 16943402 Lal7g1096 7 16938020 16943402 ECH
Lal7g1096 7 16938020 16943402 Lal19g1239 19 15650592 15653764 LSH