Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1080 ATGATACCTACAACTTATCGCCATTCAGTATCTTGTATTATGCCTCCTCTCGATCTTAATGAAGTTCATAACCATCACCAACTCTTCAATCCAAACCATCAACCACCCTCTTCTTCATTTTCTTCTCCATCATATCCTATTCTCTTCAACCCACCCAATCATTATCAACAAGGATCTTACTACTTGGAACCAAACCACTTTCCAAGTCATCATGAAGAGACTGGGAAGATTATTATTCCTTCAAGCGAATCTTCAAGGGATCATTCAGCAGCAGAAAATCATGGTATCGGCATTGGAAGCAAGGTAACGGTTTGGAAAGAAGATAGAGGTGAAAATCTTCAAGCAGTTGCTGAGGATGGTTCAATGAAGTGGATACCTTCAAAGATGAGAATTATGCGAAAGATGATGGCTTCGGATCAAACAAGGGGTTCATATGTAGCAGGAAGCTCTACGCAGAAGATTGAACATCAAAAGCAACCATTGTCACCTTTTGGAACTGATAATAGCAGCAACAATTATCCAAACCACAGTACTATTAACACTGTTAGGGTTTGCTCTGATTGTCACACCACTAAGACCCCTCTCTGGAGGAGTGGACCAAGGGGCCCTAAGTCACTTTGCAACGCCTGTGGAATTAGACAAAGGAAGGCAAGACGTGCCATGGCTGCAGCAAATGGTAGAATTGCAATGGCAGCTGAGAAATCCGTGAAGGGAAAAGAGAAGAAGTCCAAAACTGATTGTGCACCATCAAAGATGAAAAAGAAGTGCAAGCTTATATCCAAGGCATCTTCTGAAAGTACAAACAAGTTTAGTTTTGAGGATTTGACATTAAGATTAAGTAAGAATGTGGCTTTCAAACAAGTTTTCCCTCAGGATGAGAAGGAAGCTGCTATACTGCTCATGGCTTTATCTTATGGCTTAGTTCATGGATGA 933 0.4105 MIPTTYRHSVSCIMPPLDLNEVHNHHQLFNPNHQPPSSSFSSPSYPILFNPPNHYQQGSYYLEPNHFPSHHEETGKIIIPSSESSRDHSAAENHGIGIGSKVTVWKEDRGENLQAVAEDGSMKWIPSKMRIMRKMMASDQTRGSYVAGSSTQKIEHQKQPLSPFGTDNSSNNYPNHSTINTVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAANGRIAMAAEKSVKGKEKKSKTDCAPSKMKKKCKLISKASSESTNKFSFEDLTLRLSKNVAFKQVFPQDEKEAAILLMALSYGLVHG 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1080 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 179 219 - -
Lal7g1080 310 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 310 - -
Lal7g1080 310 Gene3D - 180 257 IPR013088 GO:0006355|GO:0008270
Lal7g1080 310 ProSitePatterns GATA-type zinc finger domain. 185 210 IPR000679 GO:0006355|GO:0043565
Lal7g1080 310 ProSiteProfiles GATA-type zinc finger domain profile. 179 215 IPR000679 GO:0006355|GO:0043565
Lal7g1080 310 Pfam GATA zinc finger 185 218 IPR000679 GO:0006355|GO:0043565
Lal7g1080 310 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 310 - -
Lal7g1080 310 SMART GATA_3 179 231 IPR000679 GO:0006355|GO:0043565
Lal7g1080 310 MobiDBLite consensus disorder prediction 26 45 - -
Lal7g1080 310 MobiDBLite consensus disorder prediction 148 172 - -
Lal7g1080 310 CDD ZnF_GATA 184 212 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1080 Lal-Chr7 16817856 16819815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1080 101 310 C2C2-Gata Transcription Factor Family AT4G26150 38.115 2.84e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal7g1080 GATA 3.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1080 - - gmx:100810698 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1080 7 16817856 16819815 Lal7g1080 7 16817856 16819815 ECH
Lal14g1680 14 17006227 17008252 Lal7g1080 7 16817856 16819815 LSH
Lal7g1080 7 16817856 16819815 Lal17g1548 17 16886106 16888283 PCT
Lal17g1548 17 16886106 16888283 Lal7g1080 7 16817856 16819815 PCT