Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1061 GCCGTTGCATATAGTCTCGTTCTCCATCACAATCCTCATTCGGGAATTAGGGTTTGCAAAGGCACACATCCAACGCCACCTCTGGTGTTTCCATCTCTCATCCCTCACTCCCTATTTGCGACAATGAATGTTCAACTGAGTAAGAAGAGAAAGTTCGTAGCTGATGGAGTTTTCTTCGCTGAACTGAATGAGGTTTTAACCAGAGAGCTTGCTGAAGATGGATACTCTGGTGTTGAGGTTAGGGTTACTCCAATGCGCACTGAGATCATTATAAGAGCCACTCGCACCCAAGCCGTACTAGGTGAGAAGGGAAGACGAATCAGAGAACTGACATCAGTGGTGCAGAAGAGATTCAAGTTTGAAGAGAACACTGTGGAGCTATATGCTGAGAAGGTGAACAACCGTGGTCTTTGTGCTATTGCACAAGCTGAGTCCCTTCGTTACAAGCTTCTTGGTGGTCTCGCTGTTCGAAGAGCTTGCTATGGTGTATTGAGATTTGTCATGGAAAGTGGTGCCAAGGGTTGTGAGGTCATTGTCAGTGGTAAGTTGAGGGCCCAACGAGCCAAATCTATGAAGTTTAAGGATGGGTACATGATATCCTCTGGGCAACCAGTCAAGGATTATATAGACTCTGCAGTAAGACATGTGCTCCTCAGACAGGGTGTTCTTGGTATCAAGGTCAAGATTATGCTTGATTATGATCCTAAGGGGAAGCAAGGTCCTAAAACTCCCCTCCCTGATATTGTCACAATTTACACTCCAAAAGAGGAAGAAGAATATATCAGGCCTGCTGCTGCTGCTGTGTTGGCCAATGATGTTGAGATCCCTGTGGCTTGA 837 0.46 AVAYSLVLHHNPHSGIRVCKGTHPTPPLVFPSLIPHSLFATMNVQLSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFEENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDYDPKGKQGPKTPLPDIVTIYTPKEEEEYIRPAAAAVLANDVEIPVA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1061 278 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 51 140 IPR009019 GO:0003723
Lal7g1061 278 Pfam Ribosomal protein S3, C-terminal domain 147 229 IPR001351 GO:0003735|GO:0006412
Lal7g1061 278 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 45 275 - -
Lal7g1061 278 SMART kh_6 83 152 IPR004087 GO:0003676
Lal7g1061 278 Gene3D - 134 272 IPR036419 -
Lal7g1061 278 TIGRFAM uS3_euk_arch: ribosomal protein uS3 49 251 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lal7g1061 278 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 45 275 - -
Lal7g1061 278 Gene3D - 39 132 IPR015946 -
Lal7g1061 278 Pfam KH domain 61 134 IPR004044 GO:0003723
Lal7g1061 278 ProSiteProfiles Type-2 KH domain profile. 62 133 IPR004044 GO:0003723
Lal7g1061 278 ProSitePatterns Ribosomal protein S3 signature. 188 224 IPR018280 -
Lal7g1061 278 CDD 40S_S3_KH 56 136 - -
Lal7g1061 278 SUPERFAMILY Ribosomal protein S3 C-terminal domain 134 232 IPR036419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1061 Lal-Chr7 16697250 16701174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1061 42 264 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 88.341 2.40e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1061 K02985 - gmx:100795581 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1061 7 16697250 16701174 Lal7g1061 7 16697250 16701174 ECH