Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1042 ATGAAGTCTCCATCCAATGGTTGTTCGCCTAATTCAGCTGAAGGAGAAAGGAAGACCATCAATTCAGAGTTATGGCATGCTTGTGCCGGACCTTTGGTTTCTTTGCCTCCTGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAACAGACTGACTTCATTCCCAGCTACCCTAACCTTCCATCTAAGTTGATTTGCATGCTTCACAATGTTGCCCTACATGCTGATCCGGAAACTGATGAGGTCTATGCACAGATGACCCTTCAGCCTGTAAACAAATATGAGAAGGAAGCAATACTGGCATCAGATATTGGTCTCAAACAAAGCCGACAACCTACTGAATTCTTTTGCAAAACCCTCACAGCTAGTGACACAAGCACTCATGGTGGATTTTCTGTTCCCCGTAGAGCAGCCGAGAAAATATTCCCAGCTCTGGACTATTCAATGCAACCTCCTGCTCAGGAGCTTGTTGCCAAAGATTTGCATGACAGTACATGGGCATTTAGACATATTTATCGTGGACAACCAAAGAGGCATCTACTGACTACTGGATGGAGTGTATTTGTCAGCACAAAAAGAGTGTTTGCCGGAGATTCTGTTCTGTTTATCAGAGATGAAAAACATAATCTTCTTTTAGGTTTAAGGCGAGCTAACAGACAACAGGCAGCACTGTCTTCATCAGTAATATCCAGTGACAGCATGCATATTGGTATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATCACAGCCCATTTACTATATTTTACAATCCAAGGGCCAGCCCCTCTGAATTTGTTATTCCATTGGCAAAGTATAACAAAGCAATGTTCACTCAAGTTTCACTTGGAATGAGATTTAGAATGATGTTTGAGACTGAGGAGTCAGGAGTGCGTAGATACATGGGTACGATCACTGGAATCAGCGACTTGGATCCTGTCCGATGGAAAAGTTCTCAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGGGAGCGTCCAAGCAGAGTTTCGCTTTGGGAAATTGAACCAGTAGTATCTCCTTTCTACATTTGTCCACCTCAATTTTTAAGGTCCAAGTTCCCAAGGCAACCAGGAATGCCAGATGATGACTCTGATATTGAAAATGCTTTCAAGAGAACAATGCCCTGGCTTGGTGAAGACTTTGGTATGAAAGATTCCTCAAATTCAGTCTTCCCTGGTTTGAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCTCAACCAGTATTTTTCCCATCCATGCTTTCACCCAATACTCTGCACTGTAACCTTGGAACTGATGACCCGTCTAAGTTGTTGAGCTTTCAAGATTCTTCCCTCTCTGCACCAAGTGTTCAGTTTAACAAACCTAATTTACCGAATCAAATCAACCAATTGCAGCAGTCCCCGGCGTCATGGCCTCAACTGCAACAACAGCAGCTGCTGCAGCAACAGCAACAACAACAGCTGCTGCAGCAGCAACAGCAACAACAACAACAGCTGCATCAGCAGCAACAACAACAACAACAGCAACAACTGCATCATCAGCAGCAACAACAACAGCAACAACAGCAACAGCTGCATCAACAGCAGCAACAACAGCAGCAGCTGCTGCAGCAGCCGCAACAGCAACATAATCAGCTGCAGCAGCCGCAACAGCAACATCATCAGCTGCAGCAGCAGCAACAGCAAAATCATCAGCTGCAGCCGCCGCAACAGCAAAATCATCAGCTGCAGCCGCCGCAACAGCAACATCAGCTGCAGTCATTGTTGCCAATGCCAGTAAACCAACTCCAGCAGCAGAGGCAACATCAGCTTCCTGAACCACAAAACATGCCATTACTCCAGCAACAGCCCCAAATGCCTCAGCAGCTAGGACAGAAGCCACAGTCGTATCAATGTGGTATTGTAAATAATGGCACAGTTTCTTCTAACCAGAATGCAAATCAATTTGTTCAACAACCGATGGCCTACTCTCAATTTCAGCAGCAACAATTACTTTCAGGAGGTATCACACCCCAGCAAAATATCCAATCAACTAGTAAGAATACATACCCACTTACATCCCTACCGCAAGATTCAAAATCTCAGCAACAGATAGACCAGCAAGCAAGTCTCTTCCAGAGGCAGCAGCAAAACCTGCAACAGTCTCCACTTCAGTTGTTGCAACAAAACCTGTCACAGAGGGCGATGCAGCAACCACCAATGACTCAAATGTCACTACAAAATCCTTCAGAGCAACAACTACAGCTACAGTTTCTGCAGAAATTGCAGCAGCAACAGCAGCAGCATCTTCTTTCCAATTCTAACCCACTTTTGCAGTCTCAGTTTCTACAGCAACAAAGTACTCACCTACAAAATCAGAAATTACCACAACTGCCTCTATCTCAGCTTGAGCCACAGCAGCTTGGTATTGGTAATAATGTATTACCAACAGATAAGCTTCTCAATGGCAATAACTTCACCTGTTCTTCAGCTCTTGTGCAATCACAACAGCTTCTTGTGAATCAATCCCTAAATACACAGAAATCAGTTACTATCACTAGAGCTCCCTCTACTCTCACAGATGGAGATGCCCCATCGTGCTCAACCTCGCCATCTACTAATAACTGCCAGATATCTACATCAAACCTCCTGAAAAGAAATCAACAAGATCAGGCCACATTAGGGGGGAGTTTGGTAGTTGATTCCACAAGTAATCTCATACAGGAGCTTCAGAGTAAGCCTGAAATTCAGATCAAACATGAGTTCCATGGTGTAAAAGGACCTGACAATAAAAAATATAAAGGGACAATTACTGATCAGCTGGAGGCTTCTTTTTCTGGAACATCTTACTGTCTTGACCCTGGTAATGTCCAGCAAAACCTACCACTTCCGAACTTCTTCATAGATGGGGATATCCAATCACACCCTAGAAACAATCTACCATTTGACTCTAATCTTGACGGACTAACATCTGATACTATGCTTTTAAGAGGTTCGGACTCTCAAAAGGATCTTCAAAATTTGTTGGCTAATTATGGTGGTGCTCCAAGAGACATTGAAACCGAGCTATCCACTGCTGACATCAGCTCACAGTCATTCGGAGTGCCAAATGTGTCTTTTAATCCTGCTTGCTCAAGTGATGTTGGCATGAATGATACCGGGGTTTTGAATACTAGTGTGCGGACTAACCAGACTCAACGAGTGCGAACATACACGAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGACGTCACCCGTTACAAGGGATATGATGAACTCCGATATGATTTGGCTCGTATGTTTGGGATTGAAGGCCAGCTAGAAGATCCTCAAAGGACTGAGTGGAAACTGGTATATGTAGATCACGAAAGTGACATTCTTCTTGTTGGTGATGATCCTTGGGAAGAATTTGTAAGCTGTGTCCAAAGCATAAAGATATTGTCATCTGCTGAAGTGCAACAAATGAGCTTGGATGGGGATTTAGGTAATGTTCCAATCCCCAATCAATCTTCTAGTGGGGCAGATAGTGGCAATGCATGGAGGGGACAGTATGATGATAACTCTGCTGCATCATTTAATAGATAA 3630 0.4408 MKSPSNGCSPNSAEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDIGLKQSRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDYSMQPPAQELVAKDLHDSTWAFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIRDEKHNLLLGLRRANRQQAALSSSVISSDSMHIGILAAAAHAASNHSPFTIFYNPRASPSEFVIPLAKYNKAMFTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKSSQWRNLQVGWDESTAGERPSRVSLWEIEPVVSPFYICPPQFLRSKFPRQPGMPDDDSDIENAFKRTMPWLGEDFGMKDSSNSVFPGLSLVQWMSMQQNNQFSAAQPVFFPSMLSPNTLHCNLGTDDPSKLLSFQDSSLSAPSVQFNKPNLPNQINQLQQSPASWPQLQQQQLLQQQQQQQLLQQQQQQQQQLHQQQQQQQQQQLHHQQQQQQQQQQQLHQQQQQQQQLLQQPQQQHNQLQQPQQQHHQLQQQQQQNHQLQPPQQQNHQLQPPQQQHQLQSLLPMPVNQLQQQRQHQLPEPQNMPLLQQQPQMPQQLGQKPQSYQCGIVNNGTVSSNQNANQFVQQPMAYSQFQQQQLLSGGITPQQNIQSTSKNTYPLTSLPQDSKSQQQIDQQASLFQRQQQNLQQSPLQLLQQNLSQRAMQQPPMTQMSLQNPSEQQLQLQFLQKLQQQQQQHLLSNSNPLLQSQFLQQQSTHLQNQKLPQLPLSQLEPQQLGIGNNVLPTDKLLNGNNFTCSSALVQSQQLLVNQSLNTQKSVTITRAPSTLTDGDAPSCSTSPSTNNCQISTSNLLKRNQQDQATLGGSLVVDSTSNLIQELQSKPEIQIKHEFHGVKGPDNKKYKGTITDQLEASFSGTSYCLDPGNVQQNLPLPNFFIDGDIQSHPRNNLPFDSNLDGLTSDTMLLRGSDSQKDLQNLLANYGGAPRDIETELSTADISSQSFGVPNVSFNPACSSDVGMNDTGVLNTSVRTNQTQRVRTYTKVQKRGSVGRCIDVTRYKGYDELRYDLARMFGIEGQLEDPQRTEWKLVYVDHESDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVPIPNQSSSGADSGNAWRGQYDDNSAASFNR 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1042 1209 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Lal7g1042 1209 Gene3D - 289 361 - -
Lal7g1042 1209 MobiDBLite consensus disorder prediction 1178 1209 - -
Lal7g1042 1209 Gene3D - 1077 1171 - -
Lal7g1042 1209 CDD B3_DNA 125 221 IPR003340 GO:0003677
Lal7g1042 1209 SUPERFAMILY CAD & PB1 domains 1095 1160 - -
Lal7g1042 1209 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Lal7g1042 1209 ProSiteProfiles PB1 domain profile. 1082 1175 IPR000270 GO:0005515
Lal7g1042 1209 MobiDBLite consensus disorder prediction 691 721 - -
Lal7g1042 1209 Gene3D - 124 227 IPR015300 -
Lal7g1042 1209 PANTHER AUXIN RESPONSE FACTOR 19 1 535 - -
Lal7g1042 1209 PANTHER AUXIN RESPONSE FACTOR 19 688 1196 - -
Lal7g1042 1209 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 535 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal7g1042 1209 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 688 1196 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lal7g1042 1209 MobiDBLite consensus disorder prediction 469 488 - -
Lal7g1042 1209 SMART B3_2 126 228 IPR003340 GO:0003677
Lal7g1042 1209 MobiDBLite consensus disorder prediction 1173 1209 - -
Lal7g1042 1209 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Lal7g1042 1209 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lal7g1042 1209 Pfam AUX/IAA family 1075 1168 IPR033389 -
Lal7g1042 1209 Coils Coil 494 558 - -
Lal7g1042 1209 MobiDBLite consensus disorder prediction 560 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1042 Lal-Chr7 16564862 16572735 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1042 1 489 B3 DNA Binding Superfamily AT1G19220 80.204 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lal7g1042 AUX_IAA 8.7e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1042 - K14486 gmx:100816054 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1042 7 16564862 16572735 Lal7g1042 7 16564862 16572735 ECH
Lal14g1637 14 16738705 16746000 Lal7g1042 7 16564862 16572735 LSH
Lal7g1042 7 16564862 16572735 Lal17g1480 17 16233046 16246817 PCT
Lal7g1042 7 16564862 16572735 Lal4g1505 4 19217790 19228077 PCT
Lal17g1480 17 16233046 16246817 Lal7g1042 7 16564862 16572735 PCT
Lal4g1505 4 19217790 19228077 Lal7g1042 7 16564862 16572735 PCT