Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1020 ATGGAAACATTAGAACTAATTGATGCTCATCAAACTCAGTCATCATCATCTTCATCTTCTTCCATTGATAGCAGCAGCAACCACCACCCTTCTAGGATACCACCACCCTCTTCATCTATGTGCCTCTCTAGTGTCTGCACCAAAACAAATGATTTGAGCACTGATCTTAGACTTGGTCTTAGTATCTCTCAATCTTCTCATTCTCAATTAGCATTATTCAATTCAACACCAAGGGAACAAATTTATGATTGGCCACCAATTAAATCCATATTGAGGAGCACCCTTGTTGAGAAACAAAACCAGCATAGACCCTCTTTGTTTGTCAAAGTCTACATGGAAGGCATTCCCATAGGTAGAAAATTGAATCTTCTAGCACACCATAGCTATGATGGACTTGTAAAAGTTCTTGGTCATATGTTTAGGATCATCATTCTTTACCCTAACTCTCCACCAATTAATTCTGGGAATTTTCATGTTCTTACATATAAGGATCAAGAAGGGGACTGGATGATGGTTGGAGATGTACCATGGGAGTTGTTCTTGACTACTGTGAAGAGGCTGAGGATCACAAGAGGAGACAGATGCTAG 588 0.398 METLELIDAHQTQSSSSSSSSIDSSSNHHPSRIPPPSSSMCLSSVCTKTNDLSTDLRLGLSISQSSHSQLALFNSTPREQIYDWPPIKSILRSTLVEKQNQHRPSLFVKVYMEGIPIGRKLNLLAHHSYDGLVKVLGHMFRIIILYPNSPPINSGNFHVLTYKDQEGDWMMVGDVPWELFLTTVKRLRITRGDRC 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1020 195 ProSiteProfiles PB1 domain profile. 105 194 IPR000270 GO:0005515
Lal7g1020 195 MobiDBLite consensus disorder prediction 1 41 - -
Lal7g1020 195 Pfam AUX/IAA family 72 192 IPR033389 -
Lal7g1020 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 195 IPR003311 GO:0005634|GO:0006355
Lal7g1020 195 SUPERFAMILY CAD & PB1 domains 101 189 - -
Lal7g1020 195 PANTHER AUXIN-RESPONSIVE PROTEIN IAA31 16 195 - -
Lal7g1020 195 Gene3D - 99 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1020 Lal-Chr7 16377232 16378809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1020 97 195 B3 DNA Binding Superfamily AT2G46530 33.333 3.19e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lal7g1020 AUX_IAA 2.9e-31 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1020 K14484 - gmx:100818083 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1020 7 16377232 16378809 Lal7g1020 7 16377232 16378809 ECH
Lal14g1616 14 16594971 16596506 Lal7g1020 7 16377232 16378809 LSH
Lal7g1020 7 16377232 16378809 Lal19g1165 19 15141168 15142744 LSH