Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1014 ATGGAAGTAGAAGATGAATGGGATTTAAGCACAGAAGAACTTGATTCTCTCGAAAGAGACGCTTTTCAAAAGATTGCTCAATTACGCAATTCACAATCTCAATCTCAATCTTCTCCTTCTCTTTCTTCTCAACCCCTTTCTACACCATCTCCTACATACCCAAACCCTTTCCCCGATCCACGTCCTCAAAAGGTTGAAAATTTATCTCAAGGTGCTAGAGCATTACCCACGTCATTGAAATCAAAAGGGTCAAGCCAAAATGTACCTTCAAAAGAATTGCCGAAGCTATCGGTCAAATTTTTTCTTCATTCAAGTGGAATTGTTGCAGCAAAATTTCAATATGAGCAGGTAGTAGTTGCTGCTTTTCGCAAAATCCCTAGAGCTTCATGGAATGCAAAAGAAAGGTTATGGATGTTCCCTCTATCTTCTTTGTCAGAAGCAGAAAAGATACTGGGAGAAATATCTGGATATAATGTTCAGGTGGAGAACATTGATCCCTTAGCATACCGGGCCATTACTGCTGCATCTGCTGTTCCGGATCTTCGAGATCGATATGACAAGATCCCTAGCTATGTCGAAACAAAGCTTTTGCCGTTTCAGCGAGACGGTGTTAGGTTTATATTGCAGCATGGAGGACGTGCTCTTTTAGCAGATGAAATGGGATTAGGGAAAACTTTGCAGGCTATTGCCGTAGCTGCATGCGTTCAAGACTCATGGCCTGTTCTCATAATTGCACCATCTTCTTTGCGCTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCGTCTGATATACTCATTGTCTTGTCTCAAAGTGGTGGATCAAATAGAGGAGGCTTCAATATAGTATCTTCAAGTGGCAAAAGTAGAATTCACCTGACTGGACTGTTCAACATTATCTCATATGATTTAGTGCCAAAGCTACAGAATATGCTTATAGCATCAGACTTTAAGGTTGTGATTGCAGATGAATCACACTTTCTAAAAAATGCTCAGGCAAAAAGGACTACTGCTTCTCTTCCGGTTATAAAGAAAGCTAAATATGCAATTTTGCTTAGTGGAACTCCTGCTTTATCCCGACCAATTGAATTATTCAAGCAGTTGGAAGCCTTGTATCCTGATGTATACAAGAATGTTCATGAATATGGTAACCGATATTGCAAGGGTGGAGTCTTTGGTGTTTTTCAAGGTGCAAGTAACCATGACGAATTGCACAATTTGATGAAGGCAACAGTAATGATTCGTAGGCTTAAAAAGGATGTTCTTTCTGAACTTCCCGTGAAGCGCAGACAACAAGTTTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCTTGAGTTGGAGATGGTAAAAGCCAAAATTAAGGCATCTAAATCAAAAGACGAGGCTGACTCACTTAAGTTTGCTCAAAAGAATCTTATTAACAAGATATATACTGATTCTGCAGAGGCCAAGATTCCATCTGTTCTTGATTATGTGGGAACTGTGATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACATCATCAGCCAATGATAGATTCGATACATGAGTTTCTTCTTAAGAAAAAAGTTGGTTGCATAAGGATTGATGGTGGTACACCTGCTGCATCAAGGCAACAATTGGTGACAGAGTACCAGGAAAAGGATGCCATAAAGGCAGCAGTGTTATCTATTAAAGCAGGAGGAGTTGGGTTAACTTTAACTGCTGCAAGCACAGTCATCTTTGCAGAACTGTCCTGGACTCCAGGTGACCTTATTCAGGCTGAAGATCGTGTTCATAGAATTGGCCAGGTGTCTTCTGTAAATATATACTACTTGCTGGCCAATGACACAGTTGATGACATCATATGGGATGTCGTGCAAAGCAAACTGGAAAACTTAGGACAGATGTTAGATGGGCATGAGAACACCTTAGAGGTCTCAACGAATGAATCAGGGAATAGCTCTGCAAAGCAAAAAACTCTTGACGAGTTTGTTAGAAGATGTGATGGCAGGGATGAGTTGGAACATCAGTCCAACCCCAAACGTTCTCGGCCCTGA 2067 0.4069 MEVEDEWDLSTEELDSLERDAFQKIAQLRNSQSQSQSSPSLSSQPLSTPSPTYPNPFPDPRPQKVENLSQGARALPTSLKSKGSSQNVPSKELPKLSVKFFLHSSGIVAAKFQYEQVVVAAFRKIPRASWNAKERLWMFPLSSLSEAEKILGEISGYNVQVENIDPLAYRAITAASAVPDLRDRYDKIPSYVETKLLPFQRDGVRFILQHGGRALLADEMGLGKTLQAIAVAACVQDSWPVLIIAPSSLRLQWASMIQQWLNIPSSDILIVLSQSGGSNRGGFNIVSSSGKSRIHLTGLFNIISYDLVPKLQNMLIASDFKVVIADESHFLKNAQAKRTTASLPVIKKAKYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGVFGVFQGASNHDELHNLMKATVMIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFLELEMVKAKIKASKSKDEADSLKFAQKNLINKIYTDSAEAKIPSVLDYVGTVIEAGCKFLIFAHHQPMIDSIHEFLLKKKVGCIRIDGGTPAASRQQLVTEYQEKDAIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTLEVSTNESGNSSAKQKTLDEFVRRCDGRDELEHQSNPKRSRP 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1014 688 CDD SF2_C_SNF 492 616 - -
Lal7g1014 688 SMART ultradead3 192 385 IPR014001 -
Lal7g1014 688 SMART helicmild6 522 605 IPR001650 -
Lal7g1014 688 Gene3D - 169 443 IPR038718 -
Lal7g1014 688 Pfam Helicase conserved C-terminal domain 506 605 IPR001650 -
Lal7g1014 688 Coils Coil 633 653 - -
Lal7g1014 688 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1 3 671 IPR030101 GO:0006281|GO:0031297|GO:0036310
Lal7g1014 688 CDD DEXHc_HARP_SMARCAL1 196 419 - -
Lal7g1014 688 Gene3D - 460 682 IPR027417 -
Lal7g1014 688 MobiDBLite consensus disorder prediction 25 48 - -
Lal7g1014 688 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 671 - -
Lal7g1014 688 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 496 648 IPR001650 -
Lal7g1014 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 419 IPR027417 -
Lal7g1014 688 Pfam SNF2-related domain 214 475 IPR000330 GO:0005524|GO:0140658
Lal7g1014 688 ProSiteProfiles HARP domain profile. 92 166 IPR010003 -
Lal7g1014 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 652 IPR027417 -
Lal7g1014 688 MobiDBLite consensus disorder prediction 20 65 - -
Lal7g1014 688 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 377 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1014 Lal-Chr7 16344475 16354945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g1014 463 625 RAD5 or RAD16-like Gene Family AT1G05120 30.357 1.82e-16 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal7g1014 SNF2_N 5.7e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1014 K14440 - gmx:100797654 1134.4