Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0984 ATGGGAAGATCAGAGGCTGTGGCTTTTCATCATCCGCTGGTGCTGGTGCTTATCTTAAACAAACCCATGGGTTCCATTGTATTAGCCAAGCTGGATAGACACGTAGGAGTTCGCTACACCAACCTCAACAACAATGACCCTCTCGCTTTTCGTCACGCGAGGTCTCACTCTCGTTTCTCTCACTCTCCTATCAACTACACTAACCCTCGCCGGAGCCCCTCCTCTGGCTTCCGCGGCCCCGCCCCTCATCACCACCGCGCATTCCAAACCCCGCCACGTCGCTCTCCCGGAGGGTTCCGACCAATCAGCGGCGGGGAAGGTTTCAGAACAATGAGTGGCGAGGGTTCGGGAGAATACGGGTTCAATACTTACCAGCAACAGCAGCAGCAACAACAACCGCAATTGTCTGGCCAGAAACGAGGGTTTTCGTTCTCTGGGCGCGGAGGTTCACCGGACCGTTTTGACAGAGGAAGTTTTGCCAAACTTTTTGTTGGATCTGTTCCCCGTACAGCCACTGAAGAAGATATTCGGCCTCTGTTTGAGGAACATGGGAATGTGATTGAAGTTGCACTGATCAAGGATAAAAAAACTGGACAACATCAAGGTTGTTGTTTTATAAAGTATACTACTTCTGAAGACGCTGACCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTATTGGTCCAATCCAAGTGCGGTATGCTGATGGTGAACGGGAACGCCTCGGTGCAGTAGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACTGCAAAGGAAATTGAGGAAATATTCTCAAAATATGGGCGTGTAGAAGATGTCTATCTTATGCGTGATGAGAACAAACAAAGCCGTGGATGTGGTTTTGTGAAGTATTCAAATCGAGATATGGCACTGTCAGCTATAAATGCACTAAATGGAATCTATACAATGAGAGGTTGTGATCAACCACTAATTGTCCGGTTTGCTGATCCTAAGAGACCTCGTCACGGAGATTCCAGGGGCCCAACATTCGGAGATCCAGGATCAGGTCCTAGATTGGACCCACCAGGTGCAAGATTTCCTCCCAATGCTAGTGTTCCTATGGGTGATCGAATGCCTCCCCCAAATGCATGGCGTCCTATGCATCCACCAAATATGGGACCATCCTCTAATGCCGATAATCATGGTATGGAGCCTCAATGGTTTCCAAGATCTGGTGACACAACATTGGCTATAAATGCAGGTGGTCCTATGACTGGCATAGGAGGCCCCATAGATGGTTGTTTTAAGGTTGAGTCTCTGACATCAATGTCACAACAGAATTTCAACCAGTCTGTACCACATATTCCACCACTCAACCAAGAAATATCACCATTGCAGAAACCTGTTCAATCATCTCAGGAGTTGCCACCTGCTCACCAGCTGCACCCGGAACCTCAAGCACCAATGCCCTACTCCCAAATTCCATCACAATCATCTTTTAGGCAAGTTGGCCAACCACAACTTCCTCTTTCTGCTGGAAAGCAAGGCACAAGTGGACAATTTCCAACTACTCAGTCACAAATTCATCAGAGTGCTTTGCCTGCTTCAATTCCTCGTGTTCTTCATGATACCAATTTCCAACCTAATACACCATTTACTACGAATCAACAGCAAGCTCCTCCCTCTGTGCATCAGCGGCAGCAGCCACTTCAACCTCATCAGCAATCCCCTTCTCAGTTAGCTCAGATGTTGTCACATCAAAAACAGACTTTACAAGCAAGTCTTCATTCGTCACAGCAAGTGTTCTCCCAGCTTCAGCAACAAGTACAGATGATTCAACCATATAGTCAAACATCAACTATGCAGCAAAATGCAGCAATTGCTAACAAGCAGCAGTCCACTAATTCCACAGCTGCACCCATTGGAGACGTGTCTTCGTCAACATCTGCTACTACTGTCGCACCAGGGATAAGCCAGAACACAGCTCTTGCTAAATGTAATTGGACAGAGCATTTATCTCCAGAGGGCTTCAAGTACTACTACAATAGTGTTACTGGTGAGAGTCGGTGGGAGAAACCTGAGGAATTGGCATTATCTGAAAAGCAACAGCAAAGGCTACTTGGTCAGCACTCACAAACTCAGTCACAACCTTCAATGATATCTGCCCATCAAGTTCCACAAATGCAACAGGCTCAGCCTCAAAGTGACTTTCAAGGACAGATTCTCCACCAGCAACAAATGCAGCAGCCTTCGGCGTATGGAGTCACAGGTCATCAAAATGTTCAGGATGTTGGTTACAAACAATTACAGGCATCAGCTATTTCTGCTGGTGATCCTGGACGCTACTCAAATGGCATTCACACTACACAAGACTGGATGTGGAAAAATAAGCCAGCAGGTGTTTGA 2388 0.469 MGRSEAVAFHHPLVLVLILNKPMGSIVLAKLDRHVGVRYTNLNNNDPLAFRHARSHSRFSHSPINYTNPRRSPSSGFRGPAPHHHRAFQTPPRRSPGGFRPISGGEGFRTMSGEGSGEYGFNTYQQQQQQQQPQLSGQKRGFSFSGRGGSPDRFDRGSFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGCCFIKYTTSEDADQAIRALHNQHTLPGGIGPIQVRYADGERERLGAVEYKLFVGSLNKQATAKEIEEIFSKYGRVEDVYLMRDENKQSRGCGFVKYSNRDMALSAINALNGIYTMRGCDQPLIVRFADPKRPRHGDSRGPTFGDPGSGPRLDPPGARFPPNASVPMGDRMPPPNAWRPMHPPNMGPSSNADNHGMEPQWFPRSGDTTLAINAGGPMTGIGGPIDGCFKVESLTSMSQQNFNQSVPHIPPLNQEISPLQKPVQSSQELPPAHQLHPEPQAPMPYSQIPSQSSFRQVGQPQLPLSAGKQGTSGQFPTTQSQIHQSALPASIPRVLHDTNFQPNTPFTTNQQQAPPSVHQRQQPLQPHQQSPSQLAQMLSHQKQTLQASLHSSQQVFSQLQQQVQMIQPYSQTSTMQQNAAIANKQQSTNSTAAPIGDVSSSTSATTVAPGISQNTALAKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELALSEKQQQRLLGQHSQTQSQPSMISAHQVPQMQQAQPQSDFQGQILHQQQMQQPSAYGVTGHQNVQDVGYKQLQASAISAGDPGRYSNGIHTTQDWMWKNKPAGV 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0984 795 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 241 IPR000504 GO:0003723
Lal7g0984 795 SUPERFAMILY RNA-binding domain, RBD 251 350 IPR035979 GO:0003676
Lal7g0984 795 MobiDBLite consensus disorder prediction 354 382 - -
Lal7g0984 795 MobiDBLite consensus disorder prediction 442 471 - -
Lal7g0984 795 Gene3D - 656 699 - -
Lal7g0984 795 ProSitePatterns WW/rsp5/WWP domain signature. 662 687 IPR001202 GO:0005515
Lal7g0984 795 Gene3D - 247 338 IPR012677 -
Lal7g0984 795 Pfam WW domain 661 687 IPR001202 GO:0005515
Lal7g0984 795 ProSiteProfiles WW/rsp5/WWP domain profile. 662 689 IPR001202 GO:0005515
Lal7g0984 795 SMART ww_5 657 689 IPR001202 GO:0005515
Lal7g0984 795 Gene3D - 120 246 IPR012677 -
Lal7g0984 795 SUPERFAMILY WW domain 661 691 IPR036020 GO:0005515
Lal7g0984 795 SMART rrm1_1 252 327 IPR000504 GO:0003723
Lal7g0984 795 SMART rrm1_1 161 237 IPR000504 GO:0003723
Lal7g0984 795 CDD WW 659 689 IPR001202 GO:0005515
Lal7g0984 795 MobiDBLite consensus disorder prediction 442 586 - -
Lal7g0984 795 PANTHER TRANSFORMER-2-RELATED 127 746 - -
Lal7g0984 795 MobiDBLite consensus disorder prediction 330 401 - -
Lal7g0984 795 MobiDBLite consensus disorder prediction 55 152 - -
Lal7g0984 795 MobiDBLite consensus disorder prediction 536 586 - -
Lal7g0984 795 MobiDBLite consensus disorder prediction 116 143 - -
Lal7g0984 795 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 331 IPR000504 GO:0003723
Lal7g0984 795 CDD RRM2_FCA 252 331 IPR034645 -
Lal7g0984 795 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 127 746 - -
Lal7g0984 795 MobiDBLite consensus disorder prediction 59 74 - -
Lal7g0984 795 MobiDBLite consensus disorder prediction 485 527 - -
Lal7g0984 795 SUPERFAMILY RNA-binding domain, RBD 123 245 IPR035979 GO:0003676
Lal7g0984 795 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 224 IPR000504 GO:0003723
Lal7g0984 795 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 319 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0984 Lal-Chr7 16112863 16122818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0984 112 357 Eukaryotic Initiation Factors Gene Family AT4G34110 25.725 2.02e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0984 - - gmx:100798390 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0984 7 16112863 16122818 Lal7g0984 7 16112863 16122818 ECH
Lal14g1586 14 16405738 16415989 Lal7g0984 7 16112863 16122818 LSH