Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0980 ATGGCATCTTCATCTGTGACGATATTAAACCCAGTAACGAACACGGATCGGTCACGTGACTCAAAGAGGAAAAAGAAGAAGAAATCTCAGTTGAAACACCACCAAGATTCGAATACTCACGCCAAATGGAAATCTCAAGAACAACAACAACTCTACTCCTCCAAGCTCCACCATGCCTTAACCACATCATCACCACCACGTGGCGGGAAAGCCGTTCGTGAAGCCGCTGATAGAGTCCTCGCCGCCACGGCGAAGGGGAGGACACGGTGGAGCCGGGCCATATTAACGAACCGGCTGAAGCTCAAGTTCAGGAAGCAAAAGAACAAGAAGCAGAGGATGATCGCCGGAGCAACCGGGATTAGCCGGTGGAAGAAGCCACGTGTGAGTGTGTTAAGGCTGAAGGGGAAGGGGTTACCGGATATGCAGAAGAAAGTGAGGTTCCTTAGACGGTTAGTTCCAGGTTGTCGGAAAGAACCGTTACCGGTAATTCTAGAAGAAACCATTGATTATATACCTGCGCTTGAGATGCAGGTTCGAGCAATGACCGCTCTCTTCAACCTTCTCTCTGCTTCTGGTGACACCTCACCACCACCTAATTGA 600 0.4983 MASSSVTILNPVTNTDRSRDSKRKKKKKSQLKHHQDSNTHAKWKSQEQQQLYSSKLHHALTTSSPPRGGKAVREAADRVLAATAKGRTRWSRAILTNRLKLKFRKQKNKKQRMIAGATGISRWKKPRVSVLRLKGKGLPDMQKKVRFLRRLVPGCRKEPLPVILEETIDYIPALEMQVRAMTALFNLLSASGDTSPPPN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0980 199 CDD bHLH_AtIBH1_like 130 184 IPR044549 GO:0006355
Lal7g0980 199 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 8 194 - -
Lal7g0980 199 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 141 191 IPR036638 GO:0046983
Lal7g0980 199 MobiDBLite consensus disorder prediction 1 15 - -
Lal7g0980 199 MobiDBLite consensus disorder prediction 1 53 - -
Lal7g0980 199 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Lal7g0980 199 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 8 194 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0980 Lal-Chr7 16076439 16077038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0980 42 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G17100 56.173 2.46e-51 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0980 - - gmx:100803765 223.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0980 7 16076439 16077038 Lal7g0980 7 16076439 16077038 ECH
Lal14g1584 14 16382210 16382824 Lal7g0980 7 16076439 16077038 LSH
Lal7g0980 7 16076439 16077038 Lal5g1652 5 18824855 18825472 PCT
Lal7g0980 7 16076439 16077038 Lal3g0141 3 907837 908400 PCT
Lal7g0980 7 16076439 16077038 Lal11g0279 11 1972514 1973146 PCT
Lal5g1652 5 18824855 18825472 Lal7g0980 7 16076439 16077038 PCT
Lal3g0141 3 907837 908400 Lal7g0980 7 16076439 16077038 PCT
Lal11g0279 11 1972514 1973146 Lal7g0980 7 16076439 16077038 PCT